Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1624 ATGAAACGAAGAAAAGCCAGTTTTTGGATGGATTATTTGTTTGCAGGTTTTGTTGTGGTAGTTGGCATGTGGAGGCCGATGGCGGATGGTGCAGATCAGATCGGCAAAACGACGTCGGTTGTGAAAGTGGGTGTGGTTCTTGATTTAAGTACTTGGGTTGGGAAAATGGGTTTGAGTTGTATCAATATTTCCCTCTCCGACTTCTATTCTTCTCATCCTCAACACAACACAACAATCCTCCTCCATGTCACTGACTCTAAGGATGATCTTGTGCTGGCTGCTACTCAAGGTTCGGAGCTCATACAGAAGAGTAAAGTGGAGGCCATCCTAGGGCAAGAAAGTTCGTTCCAGGCTCCCTACATTATCCAACTAAGTGAAAAATTTGAGGTTCCATTAATCTCCTTTGCACCACCACCAACCTCCACTTTCTCTAACCTAAAATCTCCATACTTATTCCGAGCACCCTACAACCGTTTCTCCCAAATTTATGCAATTTGCGACATCATTAAAGCTTTTCAATGGGAGCAAGTTGTTATCATTTACCAAGACGATGAATTTGGAAAGTGGATTGTCGCAGATCTGATCCAGGCTTTACAGGTAGAGGTACAAACCGAAGAAGGAGTCAAGGAAGTATACACCTATGTTCATCGAATCGACCCGGCAGCTTCTGGCGACCAAATTAGAGAAGAGCTTGAAAGATTGAGCATGAAGCAGCGAGCAACCGTTTTCGTTGTCCACATGGTTCACAGTCTGGCATCTAAAGTATTCAGGATGGCCAATGAAATTGGGATAATGAGCGAAGGCTATGCTTGGATTCTCACCGAGTCCACAACAACATCCTTAAATTCTATGAATAACAACTTTTCAACTCTCAGCTGGATGCAGGGAGTTTTGGGAGTAAAAACCTACATTCCGAGAACAATGGAGGTAGACAACTTCACCATTCGATGGAGAAGGAAATTTCTACTAGACAATCCAGAAATGATCATCAAATATTATCCAAAACCAGATGTTTTTGGACTGTGGGCTTACGATGCTACTAGAGCGCTAGCCATGGCGGTCGAGAGAAGCTTCAATATTTCTTCAGGGGCATCTCAAAATGGAAAGAAAATCATGGAGTCGCTGTCAATGATAAAATTCAAAGGTCTGAGCGGGAGGGGGTTTAGTTTGGGTAAATTAGACCAACTAGAATCACAAAATTTGCAAATAGTAAATGTAATTGGAGATGGGGAAATTAGTACAGTGGGATATTGGAAGCCTGAAATGGGTTTGACTGGAGAATTTAATAAAAAAGTTAAATTAAGACCCATTATTTGGCCAGGATACTCCTTTCAACCCCCTAAGGGAAGGATTCCATTTAATCCCAGGAAGATACTGAGGATAGGAGTTCCATTTAATCTGAGTTTTACGCCTTTCTTCATACGTAACGACCACGGCATTAATGGATATTGTATAGATATCTTCCAGGCAGCTGTTGCAGAGCTTGATCCTTATTATTCTTTTCCATATGAATTTATTCCCTTCCACGGTTCATCCTACGATGACTTGATAGTGGCTGTGTACAGAGGGGAATTTGATGCTGCGGTTGGAGACATAACAATATTAGCGAACAGATCTTCGTTTGTAGATTTTACTCTGCCATTTACTGATCCTGGAATTGCTGTGATAGTTCCTAGACATGAGTCGGTGAAACATGAATGGCTATTCTTGAAGCCCTTGACTTTTAACCTTTGGATTACAAGCTTCTGCTTCTTCGTTTTCATGGGCTTCGTTGTTTGGATTCTCGAACATCAAAACAATGAAGACTTCCGTTGCGGTCCTTTGTCTCACCAAATCGCCACCAGTCTCTGGTTCTCATTCAGTATCATGGTCTTCGCCCAAAGGGAGACATTAGTGAGCAATCTATCAAGGTTAGTGGTGGTGATATGGTTCTTCGTAGTGTTCGTCCTAACACAGAGCTACACAGCTAGCTTAACGTCGTGGTTAACGGTTCAACAACTCCAACCAGTCACCGATATTGATCAGATAATAAAAAACAATTGGCATGTTGGATATCAAAAGGGCTCCTATGTTTACGACACATTAAAGTTTTTAGGCATTAAAGAAATGGTACCCTATGGCTCATTAGAGGAACTGCAGGAGCTCTTTACTAAAGGAAGCCGCAGTGGTGGTATTGATGCTGCCATTGATGAGATCCCTTACATGAAGCTCCTTCTTACAACACAATTTGGTGAATATACCATGGGGCCTTCTCAATACAATTCCGGTGGTTTTGGATTTGCATTTGCACGAGGTTCATCTTTGGTCGACGGTATGTCGAAGGCCGTGTTGAAAGTGATGCAAAGTGATAAAATAAGCCAAATAGATAAGAAGTGGTTTGGGAATAAAATCAGCCACCAATCTGTCAGTAGTGATGGTTTAGAGGCGTCTTCTTCAAGCCTTGACCTGAGTTACTTTAAGAGCTTATTCTTCATCTCCGCTTTTACAGCTATCTTCGCTCTCACCTTTTATTTCATCCATTGTTTCATTTCTAAACGAAGATTCAAAGTCCATTTCAATTACTCTGACTCCACTACCATATGGAGAATAATAACTGCCACCACTTTCCGTATTCTCTTAATGAAAGACGACAACCGTCAGGAGGATCAGAATAATGTCGGACCATCGGCGGCGGTTGCAGTAATGGACGAGGCCTCTTCGAGCACCAACACCCAATTCCCATCTCCTTCATCCCACGACTCCGTCTCAAGATTTGATGATACACGTACTAGTGAGCCATATGTTTAA 2787 42.16 MKRRKASFWMDYLFAGFVVVVGMWRPMADGADQIGKTTSVVKVGVVLDLSTWVGKMGLSCINISLSDFYSSHPQHNTTILLHVTDSKDDLVLAATQGSELIQKSKVEAILGQESSFQAPYIIQLSEKFEVPLISFAPPPTSTFSNLKSPYLFRAPYNRFSQIYAICDIIKAFQWEQVVIIYQDDEFGKWIVADLIQALQVEVQTEEGVKEVYTYVHRIDPAASGDQIREELERLSMKQRATVFVVHMVHSLASKVFRMANEIGIMSEGYAWILTESTTTSLNSMNNNFSTLSWMQGVLGVKTYIPRTMEVDNFTIRWRRKFLLDNPEMIIKYYPKPDVFGLWAYDATRALAMAVERSFNISSGASQNGKKIMESLSMIKFKGLSGRGFSLGKLDQLESQNLQIVNVIGDGEISTVGYWKPEMGLTGEFNKKVKLRPIIWPGYSFQPPKGRIPFNPRKILRIGVPFNLSFTPFFIRNDHGINGYCIDIFQAAVAELDPYYSFPYEFIPFHGSSYDDLIVAVYRGEFDAAVGDITILANRSSFVDFTLPFTDPGIAVIVPRHESVKHEWLFLKPLTFNLWITSFCFFVFMGFVVWILEHQNNEDFRCGPLSHQIATSLWFSFSIMVFAQRETLVSNLSRLVVVIWFFVVFVLTQSYTASLTSWLTVQQLQPVTDIDQIIKNNWHVGYQKGSYVYDTLKFLGIKEMVPYGSLEELQELFTKGSRSGGIDAAIDEIPYMKLLLTTQFGEYTMGPSQYNSGGFGFAFARGSSLVDGMSKAVLKVMQSDKISQIDKKWFGNKISHQSVSSDGLEASSSSLDLSYFKSLFFISAFTAIFALTFYFIHCFISKRRFKVHFNYSDSTTIWRIITATTFRILLMKDDNRQEDQNNVGPSAAVAVMDEASSSTNTQFPSPSSHDSVSRFDDTRTSEPYV 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26015346 26021344 - ClG42_08g0162400.10 Clacu08g1624 255966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1624 928 FunFam Glutamate receptor 454 566 - -
Clacu08g1624 928 PIRSF IGluLR_plant 8 926 IPR017103 -
Clacu08g1624 928 SUPERFAMILY Periplasmic binding protein-like I 39 449 IPR028082 -
Clacu08g1624 928 Gene3D - 452 566 - -
Clacu08g1624 928 SMART GluR_14 460 795 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu08g1624 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 881 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu08g1624 928 Pfam Ligand-gated ion channel 795 828 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu08g1624 928 Gene3D - 567 697 - -
Clacu08g1624 928 MobiDBLite consensus disorder prediction 896 914 - -
Clacu08g1624 928 CDD PBP1_GABAb_receptor_plant 42 425 IPR044440 -
Clacu08g1624 928 SUPERFAMILY Periplasmic binding protein-like II 438 796 - -
Clacu08g1624 928 Pfam Receptor family ligand binding region 60 408 IPR001828 -
Clacu08g1624 928 Gene3D - 157 424 - -
Clacu08g1624 928 Gene3D - 75 398 - -
Clacu08g1624 928 MobiDBLite consensus disorder prediction 896 928 - -
Clacu08g1624 928 FunFam Glutamate receptor 566 696 - -
Clacu08g1624 928 Pfam Bacterial extracellular solute-binding proteins, family 3 466 574 IPR001638 -
Clacu08g1624 928 CDD GluR_Plant 457 793 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1624 K05387 - - csv:101213397 972.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1553 Clacu-Chr8:25368157 Clacu08g1624 Clacu-Chr8:26015346 1.80E-201 dispersed
Clacu08g1624 Clacu-Chr8:26015346 Clacu11g2067 Clacu-Chr11:31582500 1.00E-103 dispersed
Clacu08g1624 Clacu-Chr8:26015346 Clacu08g1124 Clacu-Chr8:21222893 1.20E-210 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202