Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1626 ATGGCGGACGCAGGCTCCGTCTCCCACAAGAGAATGTCGTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCGGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCTCTCAACATGGGCATCAGTAAACTTGTCTTCCCTGTCTACCGAAACGTCATCGCTTTACTCCTCCTCCTCCCCTTCGCATATTTCATCGAAAAGAAAGATAGGCCTGCACTCACTGTCAACTTTGTCCTTCAGTTCTTCCTACTCGCTCTTGTTGGAATTACAGCCAATCAAGGGTTTTATTTGTTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGGATTGAGCAAGTGCGACTGAACCGAAAAGATGGGATAGCGAAAGTGATGGGTACAATATGTTGCGTAGCCGGAGCGACGGTGATCACGTTATACAAAGGGCCCACCATCTACAGCCCAGCAACGACAACGGTGATGATACAAGAGACAGCAGAGACGGCGGGGACGATGCTGATGGGGCCAGGAATGTTCCCGTCGTTAGGTGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTTTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTAGTCCTACAAGCACCGGTGCTGAAAAAATATCCGGCTCGCCTCTCAGTTACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCCTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCTGAAGCCTTTAGCATCGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCGTTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTATTTGGGAGGGATCATAGGAGCGGTGCTGATTATATCAGGACTCTACCTTGTGCTATGGGGAAAGAGCGAAGAAAAGAAGATCTTATTGGAAAGAGCTGTGATCCAGTCCGCCCCGGACCACGGCAGCAGCAGAACAAGTAGCCACGTCAAGCCGTCCATTACCCAGCCACTTCTCCATCCTACGGCTGACAATGTTTGA 1188 52.02 MADAGSVSHKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTVNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTTVMIQETAETAGTMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIALAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKILLERAVIQSAPDHGSSRTSSHVKPSITQPLLHPTADNV 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26046610 26050749 + ClG42_08g0162600.10 Clacu08g1626 255968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1626 395 PANTHER WAT1-RELATED PROTEIN 24 367 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu08g1626 395 MobiDBLite consensus disorder prediction 368 395 - -
Clacu08g1626 395 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
Clacu08g1626 395 Pfam EamA-like transporter family 210 348 IPR000620 GO:0016020(InterPro)
Clacu08g1626 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Clacu08g1626 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1626 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1626 Clacu-Chr8:26046610 Clacu10g1627 Clacu-Chr10:29624319 2.20E-63 dispersed
Clacu01g0127 Clacu-Chr1:1249270 Clacu08g1626 Clacu-Chr8:26046610 1.30E-57 transposed
Clacu03g0639 Clacu-Chr3:6830405 Clacu08g1626 Clacu-Chr8:26046610 1.30E-56 transposed
Clacu06g1558 Clacu-Chr6:26488665 Clacu08g1626 Clacu-Chr8:26046610 6.60E-110 transposed
Clacu11g1782 Clacu-Chr11:29030665 Clacu08g1626 Clacu-Chr8:26046610 2.90E-61 transposed
Clacu05g2031 Clacu-Chr5:29288267 Clacu08g1626 Clacu-Chr8:26046610 1.90E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1028 Blo01g01580 . Bda01g00511 . Bpe02g00369 . . Bma01g02344 Cmo05g00280 Cmo12g00386 . Cma09g00126 . Car12g00412 . Cpe06g00085 Cpe07g00390 Bhi04g00214 . . . Hepe10g0597 . . Cla08g01451 Cam08g1936 Cec08g1510 Cco08g1649 Clacu08g1626 . Cre08g1412 Cone4ag1945 Cone7ag1859 . Cone20ag0110 Lsi04g01711 Csa03g04250 Chy04g00454 Cme03g01914 . Blo18g00793 . Bda01g01518 Bpe02g01714 . Bma01g00742 . . . Cmo09g00123 Cma12g00435 Cma05g00275 Car05g00227 . Cpe11g00228 . . . . . . . . Cla05g01903 Cam05g2039 Cec05g2047 Cco05g2103 Clacu05g2031 Cmu05g1911 Cre05g2033 Lsi08g01356 Csa02g02098 Chy03g01417 Cme04g00502
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu07g1107 . 1 755 Nodulin-like Gene Family AT4G19180 61.2 2.9e-250 861.7
Clacu11g1782 . 19 279 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Clacu09g1923 . 27 386 Nodulin-like Gene Family AT3G28050 58.8 1.3e-113 406.8
Clacu10g0256 . 2 335 Nodulin-like Gene Family AT5G47470 60.6 1.9e-104 376.3
Clacu01g0420 . 7 338 Nodulin-like Gene Family AT5G47470 57.7 4.1e-99 358.6
Clacu09g1923 . 25 348 Nodulin-like Gene Family AT5G40230 54.0 8.0e-92 334.3
Clacu09g1923 . 18 348 Nodulin-like Gene Family AT5G40240 52.3 2.5e-90 329.3
Clacu10g1435 . 6 364 Nodulin-like Gene Family AT5G40240 50.4 2.5e-90 329.3
Clacu10g1434 . 12 335 Nodulin-like Gene Family AT5G40240 50.8 6.1e-84 308.1
Clacu05g2031 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.1e-85 311.2
Clacu08g1626 . 16 282 Nodulin-like Gene Family AT3G53210 57.3 2.0e-84 309.3
Clacu04g0890 . 99 360 Nodulin-like Gene Family AT2G37450 59.8 1.8e-82 302.8
Clacu07g0304 . 98 332 Nodulin-like Gene Family AT2G37450 56.6 5.7e-68 254.6
Clacu07g0305 . 98 334 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Clacu08g0702 . 74 314 Nodulin-like Gene Family AT2G37450 50.4 1.2e-65 246.9
Clacu11g1749 . 104 336 Nodulin-like Gene Family AT2G37450 54.5 2.9e-64 242.3
Clacu09g2039 . 100 333 Nodulin-like Gene Family AT2G37450 51.5 8.8e-61 230.7
Clacu04g0890 . 12 338 Nodulin-like Gene Family AT2G37460 67.6 8.9e-123 437.2
Clacu07g0305 . 11 334 Nodulin-like Gene Family AT2G37460 57.4 5.6e-101 364.8
Clacu07g0304 . 11 332 Nodulin-like Gene Family AT2G37460 57.1 1.0e-97 354.0
Clacu11g1749 . 16 343 Nodulin-like Gene Family AT2G37460 55.2 1.0e-97 354.0
Clacu04g0634 . 13 362 Nodulin-like Gene Family AT2G37460 51.0 3.3e-93 339.0
Clacu09g2039 . 10 333 Nodulin-like Gene Family AT2G37460 55.7 7.4e-93 337.8
Clacu09g2041 . 8 331 Nodulin-like Gene Family AT2G37460 53.1 9.7e-93 337.4
Clacu08g0702 . 2 307 Nodulin-like Gene Family AT2G37460 51.5 7.6e-90 327.8
Clacu10g1627 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.2e-88 322.4
Clacu08g1626 . 4 395 Nodulin-like Gene Family AT1G75500 72.5 3.8e-161 564.7
Clacu05g2031 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 5.9e-154 540.8
Clacu06g1558 . 21 347 Nodulin-like Gene Family AT1G75500 62.2 1.9e-115 412.9
Clacu05g2711 . 1 366 Nodulin-like Gene Family AT1G60050 50.8 1.0e-94 344.0
Clacu07g0305 . 8 361 Nodulin-like Gene Family AT2G39510 59.6 6.5e-118 421.0
Clacu07g0304 . 12 341 Nodulin-like Gene Family AT2G39510 61.6 6.3e-113 404.4
Clacu04g0890 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 1.6e-111 399.8
Clacu09g2041 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 1.6e-108 389.8
Clacu09g2039 . 13 334 Nodulin-like Gene Family AT2G39510 59.2 8.3e-105 377.5
Clacu11g1749 . 18 335 Nodulin-like Gene Family AT2G39510 57.3 2.6e-98 355.9
Clacu04g0634 . 16 339 Nodulin-like Gene Family AT2G39510 52.0 5.6e-93 338.2
Clacu10g1627 . 16 340 Nodulin-like Gene Family AT2G39510 52.1 6.8e-91 331.3
Clacu08g0702 . 2 234 Nodulin-like Gene Family AT4G08290 65.0 1.8e-80 296.2
Clacu11g1749 . 14 263 Nodulin-like Gene Family AT4G08290 53.3 1.3e-73 273.5
Clacu11g1749 . 12 355 Nodulin-like Gene Family AT4G08300 66.6 2.1e-124 442.6
Clacu08g0702 . 2 333 Nodulin-like Gene Family AT4G08300 50.1 3.5e-87 318.9
Clacu04g0890 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 5.6e-85 311.6
Clacu02g0077 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.4e-77 286.6
Clacu01g1633 . 1 236 Nodulin-like Gene Family AT5G64700 53.3 2.0e-60 229.6
Clacu02g0076 . 1 187 Nodulin-like Gene Family AT5G64700 56.3 1.1e-47 187.2
Clacu11g1455 . 1 368 Nodulin-like Gene Family AT4G30420 53.8 3.2e-104 375.6
Clacu11g1504 . 6 406 Nodulin-like Gene Family AT5G07050 63.7 1.0e-140 496.9
Clacu10g1627 . 10 342 Nodulin-like Gene Family AT5G07050 68.0 9.8e-128 453.8
Clacu04g0634 . 10 339 Nodulin-like Gene Family AT5G07050 64.3 2.1e-122 436.0
Clacu11g1749 . 18 336 Nodulin-like Gene Family AT5G07050 52.4 1.9e-94 343.2
Clacu09g2041 . 8 331 Nodulin-like Gene Family AT5G07050 50.8 7.1e-86 314.7
Clacu04g0634 . 13 357 Nodulin-like Gene Family AT3G56620 58.8 8.9e-107 384.0
Clacu11g1504 . 14 338 Nodulin-like Gene Family AT3G56620 56.7 1.8e-99 359.8
Clacu05g2711 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 7.5e-106 380.9
Clacu01g1095 . 73 401 Nodulin-like Gene Family AT1G09380 61.8 3.5e-111 398.7
Clacu02g1517 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.0e-110 397.1
Clacu10g0256 . 92 325 Nodulin-like Gene Family AT4G16620 50.2 2.2e-56 216.1
Clacu04g0634 . 13 352 Nodulin-like Gene Family AT2G40900 60.6 3.4e-109 392.1
Clacu10g1627 . 12 363 Nodulin-like Gene Family AT2G40900 53.4 1.0e-105 380.6
Clacu11g1504 . 14 333 Nodulin-like Gene Family AT2G40900 57.2 1.3e-100 363.6
Clacu06g1558 . 15 365 Nodulin-like Gene Family AT3G18200 68.5 3.2e-128 455.3
Clacu08g1626 . 16 360 Nodulin-like Gene Family AT3G18200 57.7 8.2e-108 387.5
Clacu05g2031 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 3.7e-100 362.1
Clacu11g1749 . 12 355 Nodulin-like Gene Family AT1G44800 64.6 1.9e-122 436.0
Clacu08g0702 . 2 326 Nodulin-like Gene Family AT1G44800 51.7 7.4e-90 327.8
Clacu04g0634 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 1.2e-87 320.5
Clacu11g1782 . 103 373 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Clacu11g1749 . 12 313 Nodulin-like Gene Family AT1G21890 65.7 6.3e-115 411.0
Clacu10g1627 . 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.8e-85 313.2
Clacu08g0702 . 2 284 Nodulin-like Gene Family AT1G21890 51.0 1.6e-81 300.1
Clacu04g0890 . 11 311 Nodulin-like Gene Family AT1G21890 50.3 7.8e-81 297.7
Clacu07g1236 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Clacu07g1125 . 4 417 Nodulin-like Gene Family AT4G19450 65.7 1.8e-145 512.7
Clacu06g0063 . 44 442 Nodulin-like Gene Family AT4G19450 57.7 3.5e-128 455.3
Clacu06g1755 . 7 538 Nodulin-like Gene Family AT1G74780 58.2 9.4e-179 623.6
Clacu06g1757 . 13 468 Nodulin-like Gene Family AT1G74780 57.6 6.0e-149 524.6
Clacu06g1756 . 6 441 Nodulin-like Gene Family AT1G74780 55.8 1.9e-134 476.5
Clacu02g1212 . 9 540 Nodulin-like Gene Family AT4G34950 69.8 2.4e-220 761.9
Clacu02g0446 . 1 469 Nodulin-like Gene Family AT4G34950 64.4 4.7e-184 641.3
Clacu11g0925 . 6 592 Nodulin-like Gene Family AT5G14120 68.9 8.5e-234 806.6
Clacu02g1212 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 2.1e-151 532.3
Clacu02g0446 . 1 323 Nodulin-like Gene Family AT2G16660 65.6 3.9e-121 431.8
Clacu05g2320 . 12 565 Nodulin-like Gene Family AT2G39210 70.6 1.5e-228 789.3
Clacu08g0930 . 28 604 Nodulin-like Gene Family AT2G39210 63.1 1.2e-211 733.0
Clacu05g2322 . 3 559 Nodulin-like Gene Family AT2G39210 64.3 1.8e-202 702.6
Clacu05g2321 . 15 552 Nodulin-like Gene Family AT2G39210 63.0 2.9e-200 695.3
Clacu10g1973 . 1 579 Nodulin-like Gene Family AT2G39210 59.3 1.4e-194 676.4
Clacu03g0266 . 19 575 Nodulin-like Gene Family AT2G39210 59.6 5.6e-188 654.4
Clacu04g0993 . 18 579 Nodulin-like Gene Family AT2G39210 56.4 1.2e-182 636.7
Clacu10g1976 . 15 555 Nodulin-like Gene Family AT2G39210 57.8 6.7e-181 630.9
Clacu04g0263 . 12 532 Nodulin-like Gene Family AT2G39210 52.5 7.0e-154 541.2
Clacu03g0254 . 16 557 Nodulin-like Gene Family AT2G39210 51.0 5.9e-153 538.1
Clacu03g0257 . 49 279 Nodulin-like Gene Family AT2G39210 52.3 3.0e-64 243.4
Clacu03g0256 . 20 208 Nodulin-like Gene Family AT2G39210 52.4 1.5e-55 214.5
Clacu07g1125 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.7e-147 519.2
Clacu06g0063 . 50 589 Nodulin-like Gene Family AT3G01630 50.4 3.7e-141 498.8
Clacu11g0925 . 6 429 Nodulin-like Gene Family AT3G01930 69.4 5.2e-167 584.3
Clacu06g1755 . 10 537 Nodulin-like Gene Family AT1G18940 54.5 1.2e-165 580.1
Clacu06g1757 . 7 468 Nodulin-like Gene Family AT1G18940 54.6 3.1e-142 502.3
Clacu06g1756 . 3 441 Nodulin-like Gene Family AT1G18940 53.8 6.8e-129 458.0
Clacu06g1755 . 6 539 Nodulin-like Gene Family AT2G34350 56.2 1.9e-160 562.8
Clacu06g1757 . 11 468 Nodulin-like Gene Family AT2G34350 54.1 3.3e-136 482.3
Clacu06g1756 . 8 441 Nodulin-like Gene Family AT2G34350 53.5 5.0e-124 441.8
Clacu03g0266 . 15 569 Nodulin-like Gene Family AT2G28120 70.3 4.0e-223 771.2
Clacu05g2320 . 9 568 Nodulin-like Gene Family AT2G28120 62.0 4.9e-197 684.5
Clacu08g0930 . 24 588 Nodulin-like Gene Family AT2G28120 59.1 1.3e-186 649.8
Clacu10g1973 . 19 563 Nodulin-like Gene Family AT2G28120 60.2 5.8e-182 634.4
Clacu03g0254 . 13 561 Nodulin-like Gene Family AT2G28120 57.2 2.3e-178 622.5
Clacu05g2322 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 1.8e-175 612.8
Clacu10g1976 . 17 555 Nodulin-like Gene Family AT2G28120 58.1 5.8e-174 607.8
Clacu04g0993 . 16 573 Nodulin-like Gene Family AT2G28120 55.8 2.7e-171 599.0
Clacu05g2321 . 39 537 Nodulin-like Gene Family AT2G28120 60.4 5.1e-170 594.7
Clacu03g0263 . 8 581 Nodulin-like Gene Family AT2G28120 54.1 1.1e-167 587.0
Clacu03g0261 . 2 544 Nodulin-like Gene Family AT2G28120 51.0 6.2e-160 561.2
Clacu03g0262 . 3 576 Nodulin-like Gene Family AT2G28120 50.3 5.8e-158 554.7
Clacu04g0263 . 1 535 Nodulin-like Gene Family AT2G28120 52.2 1.8e-151 533.1
Clacu03g0265 . 3 545 Nodulin-like Gene Family AT2G28120 50.3 2.2e-144 509.6
Clacu03g0256 . 14 208 Nodulin-like Gene Family AT2G28120 56.4 1.8e-58 224.2
Clacu07g1125 . 4 570 Nodulin-like Gene Family AT1G31470 56.4 1.0e-165 580.5
Clacu06g0063 . 50 596 Nodulin-like Gene Family AT1G31470 56.3 6.7e-162 567.8
Clacu09g0964 . 27 216 Nodulin-like Gene Family AT1G76800 76.8 1.4e-71 266.2
Clacu08g0842 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.0e-69 257.7
Clacu09g1502 . 10 202 Nodulin-like Gene Family AT1G76800 62.2 1.1e-58 223.4
Clacu09g1502 . 9 202 Nodulin-like Gene Family AT3G25190 68.5 1.1e-64 243.4
Clacu08g0842 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.3e-61 230.7
Clacu09g0964 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 5.8e-58 221.1
Clacu08g0842 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 5.9e-73 270.8
Clacu09g0964 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 4.6e-70 261.2
Clacu09g1502 . 7 202 Nodulin-like Gene Family AT1G21140 61.2 7.2e-63 237.3
Clacu08g0842 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 2.9e-72 268.5
Clacu09g0964 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 6.7e-69 257.3
Clacu09g1502 . 7 199 Nodulin-like Gene Family AT3G43630 61.1 2.2e-59 225.7
Clacu08g0842 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.4e-72 267.3
Clacu09g0964 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 3.5e-70 261.5
Clacu09g1502 . 7 202 Nodulin-like Gene Family AT3G43660 61.9 7.8e-62 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002368 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 1 2 3 2 2 62