Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1626 ATGGCGGACGCAGGCTCCGTCTCCCACAAGAGAATGTCGTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCGGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCTCTCAACATGGGCATCAGTAAACTTGTCTTCCCTGTCTACCGAAACGTCATCGCTTTACTCCTCCTCCTCCCCTTCGCATATTTCATCGAAAAGAAAGATAGGCCTGCACTCACTGTCAACTTTGTCCTTCAGTTCTTCCTACTCGCTCTTGTTGGAATTACAGCCAATCAAGGGTTTTATTTGTTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGGATTGAGCAAGTGCGACTGAACCGAAAAGATGGGATAGCGAAAGTGATGGGTACAATATGTTGCGTAGCCGGAGCGACGGTGATCACGTTATACAAAGGGCCCACCATCTACAGCCCAGCAACGACAACGGTGATGATACAAGAGACAGCAGAGACGGCGGGGACGATGCTGATGGGGCCAGGAATGTTCCCGTCGTTAGGTGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTTTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTAGTCCTACAAGCACCGGTGCTGAAAAAATATCCGGCTCGCCTCTCAGTTACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCCTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCTGAAGCCTTTAGCATCGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCGTTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTATTTGGGAGGGATCATAGGAGCGGTGCTGATTATATCAGGACTCTACCTTGTGCTATGGGGAAAGAGCGAAGAAAAGAAGATCTTATTGGAAAGAGCTGTGATCCAGTCCGCCCCGGACCACGGCAGCAGCAGAACAAGTAGCCACGTCAAGCCGTCCATTACCCAGCCACTTCTCCATCCTACGGCTGACAATGTTTGA 1188 52.02 MADAGSVSHKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTVNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTTVMIQETAETAGTMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIALAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKILLERAVIQSAPDHGSSRTSSHVKPSITQPLLHPTADNV 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26046610 26050749 + ClG42_08g0162600.10 Clacu08g1626 255968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1626 395 PANTHER WAT1-RELATED PROTEIN 24 367 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu08g1626 395 MobiDBLite consensus disorder prediction 368 395 - -
Clacu08g1626 395 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
Clacu08g1626 395 Pfam EamA-like transporter family 210 348 IPR000620 GO:0016020(InterPro)
Clacu08g1626 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Clacu08g1626 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1626 Clacu-Chr8:26046610 Clacu10g1627 Clacu-Chr10:29624319 2.20E-63 dispersed
Clacu01g0127 Clacu-Chr1:1249270 Clacu08g1626 Clacu-Chr8:26046610 1.30E-57 transposed
Clacu03g0639 Clacu-Chr3:6830405 Clacu08g1626 Clacu-Chr8:26046610 1.30E-56 transposed
Clacu06g1558 Clacu-Chr6:26488665 Clacu08g1626 Clacu-Chr8:26046610 6.60E-110 transposed
Clacu11g1782 Clacu-Chr11:29030665 Clacu08g1626 Clacu-Chr8:26046610 2.90E-61 transposed
Clacu05g2031 Clacu-Chr5:29288267 Clacu08g1626 Clacu-Chr8:26046610 1.90E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1626 - - - 0.0