Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1628 ATGTTGAAATCTTCATCCAACAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACTTGGGGAAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTAGCCTATGACAATGCTGCCCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCATCTTTCTCCTGTTTCTGCTTCTTCTTCTTCTTCTGATAACGTTGCTGCTAATTCTAATTCTAATTCTAATGCCAATGCCATTGTGGAAGATGTTGCTTCCTCTGTTTCTCATGAAACCAACAATAACAACACTGTATCGCCGAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGAGCTATGAGTATTAGTTTAGATGATTCTATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTATTGTTATGGAACATGAGCAGGATCATCATCATCAAGGCTTTTTTGCTGCTAATTTGATGGAAACAAATGGAAATGGTGGATGTGGATGGGATACACTTCAATGGTGTTTATGA 636 40.72 MLKSSSNNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPVSASSSSSDNVAANSNSNSNANAIVEDVASSVSHETNNNNTVSPKKRFREEEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPIVMEHEQDHHHQGFFAANLMETNGNGGCGWDTLQWCL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26057195 26057830 - ClG42_08g0162800.10 Clacu08g1628 255970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1628 211 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1628 211 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1628 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 144 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Clacu08g1628 211 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677(InterPro)
Clacu08g1628 211 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Clacu08g1628 211 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1628 211 SMART rav1_2 31 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1628 211 MobiDBLite consensus disorder prediction 1 30 - -
Clacu08g1628 211 Pfam AP2 domain 32 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1628 211 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1628 211 CDD AP2 30 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1628 Clacu-Chr8:26057195 Clacu11g0745 Clacu-Chr11:7286009 2.20E-30 dispersed
Clacu10g1700 Clacu-Chr10:30492319 Clacu08g1628 Clacu-Chr8:26057195 2.20E-27 transposed
Clacu04g1033 Clacu-Chr4:24602861 Clacu08g1628 Clacu-Chr8:26057195 3.80E-13 wgd
Clacu05g2032 Clacu-Chr5:29294067 Clacu08g1628 Clacu-Chr8:26057195 2.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48215 PF00847 AP2 2.60E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1628 - - - 0.0