Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1641 ATGTTCATAAAATCCACCAGATATTTCTCCATCGACATCAGTGTAAGAAAATGTCAGCAGAAGAAAATGGGTCCCATCAAGAAAGAGAGATTAAAGAAGAAGAAGAAGAAGAAACAGAAGAGGGGGTTTTTTCTTCTTTTTCCCACTTGGGGTTTCTCTGTTCCTTCTGATTCTATCATGGGATCTACTGTTTTCCACTTTCTTCAAGATCAGTGTTTCTTGTCTGTTCTAATGCTGTACCTTATATCTGTTTGCCTTTTGTTGAGCTTCGTTATAGCTGATTATAGTTACATCAACGTGTTCTTGATGGGAATGGCGACCCCTGTAGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAACATTACTTTTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCTATCAAGCCGATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAACAGGGAAACAAATGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATTGATGCGCTCCGGACTTTGCGCGAATTGAAACTCCTTAGGCATCTTCGCCACGAAAATGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTTTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAGTCTTCTCAAACTCTTACAAACGACCACTGCCAATATTTCCTCTTTCAGTTGCTCCGAGGCCTAAAGTATCTGCATTCTGCGAACATCCTACATCGGGACTTGAAGCCAGGGAACCTCCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAATGGGAAGAATCAATTTATGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAATTACGGGACGTCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAACTTCTCGGTAGGAAACCTATCTTCCCCGGTACAGAATGTCTGAATCAACTCAAATTGATAATTAACTTACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCCAAAGGCAAGAAGGTATATAAAATCCCTTCCATACTCTCCTGGGGCTCCTCTTTCCCGTCTTTATCCAAATGCTCATCCTCTTGCAATTGATCTCCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAGGCATTGCAACATCCTTACATGTCTCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCGATTGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCCGAGGATCTGGAAGAACACGCAGAAATGACATGTTTCCACCCCGAACATACTACAAGTAGTACTGCAGTGTATTCTTGA 1473 41.68 MFIKSTRYFSIDISVRKCQQKKMGPIKKERLKKKKKKKQKRGFFLLFPTWGFSVPSDSIMGSTVFHFLQDQCFLSVLMLYLISVCLLLSFVIADYSYINVFLMGMATPVEPPNGVRSQGKHYFSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEDLEEHAEMTCFHPEHTTSSTAVYS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26159707 26163212 - ClG42_08g0164100.10 Clacu08g1641 255983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1641 490 SMART serkin_6 136 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1641 490 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 130 461 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu08g1641 490 Gene3D Transferase(Phosphotransferase) domain 1 220 449 - -
Clacu08g1641 490 FunFam Mitogen-activated protein kinase 122 230 - -
Clacu08g1641 490 ProSiteProfiles Protein kinase domain profile. 136 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1641 490 Gene3D Phosphorylase Kinase; domain 1 123 459 - -
Clacu08g1641 490 ProSitePatterns MAP kinase signature. 171 274 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1641 490 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Clacu08g1641 490 SUPERFAMILY Protein kinase-like (PK-like) 128 430 IPR011009 -
Clacu08g1641 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1641 490 Pfam Protein kinase domain 138 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1641 490 FunFam Mitogen-activated protein kinase 220 449 - -
Clacu08g1641 490 CDD STKc_TEY_MAPK 130 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0865 Clacu-Chr7:21730838 Clacu08g1641 Clacu-Chr8:26159707 7.30E-168 dispersed
Clacu08g1174 Clacu-Chr8:21726395 Clacu08g1641 Clacu-Chr8:26159707 5.20E-113 dispersed
Clacu08g1641 Clacu-Chr8:26159707 Clacu09g2259 Clacu-Chr9:37358165 1.20E-87 dispersed
Clacu08g1641 Clacu-Chr8:26159707 Clacu01g0238 Clacu-Chr1:2331653 1.80E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73774 PF00069 Pkinase 4.80E-71 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1641 K20535 - csv:101213478 764.222