Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1643 ATGGCAAGACAGCTGCCCCAGAATCATCTCGCAAATCGCATTACAGGAACTACACCTAACCTTTGTGTGCAGGAGGAGCATCTGATCTCTGCACGCAAATGGTATTTCTGCAAACAGGAAATTGAAAATCATTCTCCCTCCAGGAAGGATGGAGTTGATTTCAAGAAAGAGTCTCAACTGCGGAAGTCATATTGCTCGTTTCTTCAAGAGCTTGGCATGAAGCTTAAAGTGCCCCAAGTAACAATTGCAAGTGCGATGATGGTATGCCACCGGTTCTATATGCGTCAGTCCCATGCTAAAAACGACTGGCAGACAATTGGAACAGCTGCTATCTTCCTTGCCTGTAAGATTGAAGAGACACCACGGTTTCTGAATGATGTAGTCGTTGTGGCTTATGAGTTGATATTCAAATGGGATCCTTCTGCCTCTAAAAGAATTAGACAAAAAGAAATTTTCAACAAACAAAAGGAATTAATCTTGATTGCGGAGAGGGTTCTATTGTCAACACTTGCTTTTGATGTTGACATTCAGCTTCCCTACAAGCCACTTGTTGCTGCTCTAAAAAGATTGGGAATGGCTGCTGATCTTGGGAAGGTGGCCTGGAATTTTGTAAATGATTGGCTTTGTACAACACTGTGCTTGGAGTACAAACCCCATTATATTGCTGCGGGGTCGATATTCCTTGCATCCAAATTTCAAAAGGTGAAATTGCCTTCAGATAAGGGAAAGGTTTGGTGGATGGAGTTTGATGTTTCGCCAAAACAGTTACAAGAGGTTATACAGCAAATGTTGAAGTTATTTGAGAAAGATAGAAAACAAGGCCTGCCACCTTCAAAAGAGAAGACTCATCAGCCAGAAGCTTTAGATGGACAGGCAAGGGTTGATAGTTCCCAATCATGTATATCCAGCGTGACAATTTCTGATCATCTTGATGAAGCCATGACGGAGGCCAGTGAGTGCAATAAGTCTGTAATGCCTAGTTGCCACAATCAACAAAATATAAATTGCTGCATCAGTCCTGTGGAAGTTTTACCCTGCCAAACAAGCGATACGGGGAGTTCAAGTAGTGCCATTGACAATGGTGATACTGGGATTTGTCTGAATACTGCGGAAAATTATCCTGATCAAATCACACAGACAACAACTGTTTCTATTTCTCGAAGCATGGATAGAAAAAGAACTGGAACACGGAATAGAGCTAGAATACGAATCCTCATTGAAGAAGAAAAGAAAGGCATCATGAAGTTGGGTATGAGCATTGTGGAACTCACAATTGCAATGAAGGATCATAAGAAAAAGATAAGCCAAGCTTGTTGA 1317 41.69 MARQLPQNHLANRITGTTPNLCVQEEHLISARKWYFCKQEIENHSPSRKDGVDFKKESQLRKSYCSFLQELGMKLKVPQVTIASAMMVCHRFYMRQSHAKNDWQTIGTAAIFLACKIEETPRFLNDVVVVAYELIFKWDPSASKRIRQKEIFNKQKELILIAERVLLSTLAFDVDIQLPYKPLVAALKRLGMAADLGKVAWNFVNDWLCTTLCLEYKPHYIAAGSIFLASKFQKVKLPSDKGKVWWMEFDVSPKQLQEVIQQMLKLFEKDRKQGLPPSKEKTHQPEALDGQARVDSSQSCISSVTISDHLDEAMTEASECNKSVMPSCHNQQNINCCISPVEVLPCQTSDTGSSSSAIDNGDTGICLNTAENYPDQITQTTTVSISRSMDRKRTGTRNRARIRILIEEEKKGIMKLGMSIVELTIAMKDHKKKISQAC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26192407 26198903 + ClG42_08g0164300.10 Clacu08g1643 255985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1643 438 Pfam Cyclin-T2-like, C-terminal domain 192 263 - -
Clacu08g1643 438 CDD CYCLIN_AcCycT_rpt2 177 268 - -
Clacu08g1643 438 PANTHER CYCLIN 31 347 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Clacu08g1643 438 SUPERFAMILY Cyclin-like 32 175 IPR036915 -
Clacu08g1643 438 Gene3D - 176 281 - -
Clacu08g1643 438 FunFam Cyclin-T1-5 like 24 174 - -
Clacu08g1643 438 Pfam Cyclin, N-terminal domain 35 174 IPR006671 -
Clacu08g1643 438 CDD CYCLIN_AcCycT_rpt1 50 173 - -
Clacu08g1643 438 Gene3D - 24 174 - -
Clacu08g1643 438 SUPERFAMILY Cyclin-like 178 275 IPR036915 -
Clacu08g1643 438 SMART cyclin_7 66 168 IPR013763 -
Clacu08g1643 438 SMART cyclin_7 181 265 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1643 K15188 - - csv:101214841 717.613
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1904 Clacu-Chr2:32564920 Clacu08g1643 Clacu-Chr8:26192407 2.30E-73 dispersed
Clacu06g0592 Clacu-Chr6:6766583 Clacu08g1643 Clacu-Chr8:26192407 2.40E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g991 . . . . . . . . Cmo05g00266 Cmo12g00397 . . . Car12g00422 . . Cpe07g00401 Bhi04g00195 . . . Hepe10g0615 . . Cla08g01465 Cam08g1953 Cec08g1528 Cco08g1666 Clacu08g1643 . Cre08g1428 . . Cone17ag1357 . . . . Cme03g01931 . . . . . . . . . . . Cma12g00447 Cma05g00261 Car05g00219 . Cpe11g00216 . . . . . . . . . . . . . . . Lsi08g01374 Csa02g02077 Chy03g01436 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008671 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 4 1 35