Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g1684 | ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGTGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTAGCGCTGCTGCCGCCGGCGTGGCGGTTGCTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCGGCCGTGGCCTGCAACGTCAACAAAACCAGCCCAACTAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCCTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGAGGCGGGGGGAATAATGGGCTATGA | 1380 | 55.58 | MVSAENNSQSAKVVASSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMASAAAAGVAVASSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVACNVNKTSPTNGGGTSVFAGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL | 459 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26474575 | 26477430 | + | ClG42_08g0168400.10 | Clacu08g1684 | 256026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g1684 | 459 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
Clacu08g1684 | 459 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 377 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Clacu08g1684 | 459 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 137 | 161 | - | - | |
Clacu08g1684 | 459 | Gene3D | Classic Zinc Finger | 62 | 105 | - | - | |
Clacu08g1684 | 459 | MobiDBLite | consensus disorder prediction | 281 | 308 | - | - | |
Clacu08g1684 | 459 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 116 | 195 | - | - | |
Clacu08g1684 | 459 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 159 | IPR036236 | - | |
Clacu08g1684 | 459 | FunFam | protein indeterminate-domain 12-like | 41 | 109 | - | - | |
Clacu08g1684 | 459 | SMART | c2h2final6 | 138 | 158 | IPR013087 | - | |
Clacu08g1684 | 459 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
Clacu08g1684 | 459 | SMART | c2h2final6 | 103 | 133 | IPR013087 | - | |
Clacu08g1684 | 459 | MobiDBLite | consensus disorder prediction | 292 | 308 | - | - | |
Clacu08g1684 | 459 | Pfam | Zinc-finger of C2H2 type | 62 | 84 | IPR013087 | - | |
Clacu08g1684 | 459 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 99 | 133 | - | - | |
Clacu08g1684 | 459 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
Clacu08g1684 | 459 | Gene3D | Classic Zinc Finger | 117 | 193 | - | - | |
Clacu08g1684 | 459 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 164 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g1340 | Clacu-Chr4:27270805 | Clacu08g1684 | Clacu-Chr8:26474575 | 3.70E-59 | dispersed | |
Clacu07g0903 | Clacu-Chr7:22721403 | Clacu08g1684 | Clacu-Chr8:26474575 | 1.40E-89 | dispersed | |
Clacu08g1684 | Clacu-Chr8:26474575 | Clacu09g0608 | Clacu-Chr9:5230313 | 6.00E-81 | dispersed | |
Clacu04g1093 | Clacu-Chr4:25165946 | Clacu08g1684 | Clacu-Chr8:26474575 | 2.80E-60 | transposed | |
Clacu01g2001 | Clacu-Chr1:31947302 | Clacu08g1684 | Clacu-Chr8:26474575 | 5.40E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48220 | PF12874 | zf-met | 0.0032 | CL0361 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g1684 | K25869 | - | csv:101217471 | 707.983 |