Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1684 ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGTGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTAGCGCTGCTGCCGCCGGCGTGGCGGTTGCTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCGGCCGTGGCCTGCAACGTCAACAAAACCAGCCCAACTAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCCTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGAGGCGGGGGGAATAATGGGCTATGA 1380 55.58 MVSAENNSQSAKVVASSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMASAAAAGVAVASSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVACNVNKTSPTNGGGTSVFAGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26474575 26477430 + ClG42_08g0168400.10 Clacu08g1684 256026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1684 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Clacu08g1684 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 377 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu08g1684 459 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Clacu08g1684 459 Gene3D Classic Zinc Finger 62 105 - -
Clacu08g1684 459 MobiDBLite consensus disorder prediction 281 308 - -
Clacu08g1684 459 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Clacu08g1684 459 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Clacu08g1684 459 FunFam protein indeterminate-domain 12-like 41 109 - -
Clacu08g1684 459 SMART c2h2final6 138 158 IPR013087 -
Clacu08g1684 459 SMART c2h2final6 62 84 IPR013087 -
Clacu08g1684 459 SMART c2h2final6 103 133 IPR013087 -
Clacu08g1684 459 MobiDBLite consensus disorder prediction 292 308 - -
Clacu08g1684 459 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Clacu08g1684 459 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Clacu08g1684 459 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Clacu08g1684 459 Gene3D Classic Zinc Finger 117 193 - -
Clacu08g1684 459 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1340 Clacu-Chr4:27270805 Clacu08g1684 Clacu-Chr8:26474575 3.70E-59 dispersed
Clacu07g0903 Clacu-Chr7:22721403 Clacu08g1684 Clacu-Chr8:26474575 1.40E-89 dispersed
Clacu08g1684 Clacu-Chr8:26474575 Clacu09g0608 Clacu-Chr9:5230313 6.00E-81 dispersed
Clacu04g1093 Clacu-Chr4:25165946 Clacu08g1684 Clacu-Chr8:26474575 2.80E-60 transposed
Clacu01g2001 Clacu-Chr1:31947302 Clacu08g1684 Clacu-Chr8:26474575 5.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48220 PF12874 zf-met 0.0032 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1684 K25869 - csv:101217471 707.983