Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1689 ATGACCTCCGACGGCGCCACTTCTGCCTCCACTTGCCGGCGGAAGCCGTCTTGGAGGGAGCGGGAGAATAATCGGACCAGAGAGCGTCGGAGGAGAGCCATCGCCGCTAAGATTTACTCTGGCCTTAGGGCTCAGGGAAACTTCAATTTGCCTAAACACTGTGACAACAACGAGGTCCTTAAAGCCCTCTGTGCTGAAGCTGGTTGGACCGTCGAAGATGACGGAACCACTTATCGGAAGGGATGCAAGCCGCCCCCAATTGATATTGTTGGCACTTCAACCAAAATCACCCCTTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCCAGTCCTATGGGATCCTACCAAGTCAGTCCCTCCTCCTCCTCCTTCCCGAGCCCGTCCCGTCTCGACGCCAACAATCCGTCGAACCTCATTCCTTATCTTCGCCAAGCGATTCCCATATCGCTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTAACCCCTCCCCTTTCATCCCCAGCCTCGAGGACTCCGCAGCCATTCCCCAATTGGGAAGTCACTGCTAAAGAATCCTTATCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCTCCAGCTAGCCCGACTCGACCTCAGCTCCATACTCCCGCCACGATCCACAAATTCGACGAATCTGAATCATCCACCAATGAGTCCAGTCAATGGGCACTTCTCCGTGCCTATGCACCTTCTGCATCGACAATGCCAACATCTCCCACGTTCAACCTTGTGAAACCTGCTGACCAACATGCTCTACACGATGGTTTCATCAAAGAAAATGGAAGAGGAAACGAATTTGAGTTCTTGGGCTACAAGGTTAAGCCTTGGGAAGGGGAGAAGATTCATGATGTCGGATTGGAGGATTTAGAGCTCACACTCGGTAGCGGTAAGGCTCGAAGCTAA 936 51.82 MTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMGSYQVSPSSSSFPSPSRLDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPATIHKFDESESSTNESSQWALLRAYAPSASTMPTSPTFNLVKPADQHALHDGFIKENGRGNEFEFLGYKVKPWEGEKIHDVGLEDLELTLGSGKARS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26508723 26510015 - ClG42_08g0168900.10 Clacu08g1689 256031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1689 311 MobiDBLite consensus disorder prediction 14 29 - -
Clacu08g1689 311 MobiDBLite consensus disorder prediction 1 29 - -
Clacu08g1689 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 310 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Clacu08g1689 311 MobiDBLite consensus disorder prediction 93 132 - -
Clacu08g1689 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1014 Clacu-Chr7:24570088 Clacu08g1689 Clacu-Chr8:26508723 1.90E-44 dispersed
Clacu01g1993 Clacu-Chr1:31866694 Clacu08g1689 Clacu-Chr8:26508723 1.20E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48221 PF05687 BES1_N 2.80E-62 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1689 K14503 - csv:101219853 533.487