Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1698 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 45.17 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26573550 26574242 + ClG42_08g0169800.10 Clacu08g1698 256040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1698 230 CDD RING-HC_AtRMA-like 28 72 - -
Clacu08g1698 230 MobiDBLite consensus disorder prediction 1 20 - -
Clacu08g1698 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 221 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Clacu08g1698 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Clacu08g1698 230 MobiDBLite consensus disorder prediction 84 122 - -
Clacu08g1698 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Clacu08g1698 230 SMART ring_2 30 70 IPR001841 -
Clacu08g1698 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Clacu08g1698 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Clacu08g1698 230 SUPERFAMILY RING/U-box 26 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1698 Clacu-Chr8:26573550 Clacu11g1996 Clacu-Chr11:30924650 8.00E-26 dispersed
Clacu10g1263 Clacu-Chr10:25485403 Clacu08g1698 Clacu-Chr8:26573550 1.10E-21 transposed
Clacu10g1745 Clacu-Chr10:30980823 Clacu08g1698 Clacu-Chr8:26573550 1.80E-26 transposed
Clacu01g1687 Clacu-Chr1:29003832 Clacu08g1698 Clacu-Chr8:26573550 2.80E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1698 K10666 - csv:101221027 412.535