Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1705 ATGGTTCAGACCAAATTTGAATCCCCCGATTGCTCTCTTAATCGCTCTAGCATAAGCTGCTACACCCAGAACGGAACCGCTTCCGCCGGTTTCTTGGACTTCAAAAACCTCACCGGAACCCATTGCGATTACCTTCTGTCGTCGATTTCCGCGGAGGCGCTCAATAGCAACGCCTCTGCCGGAATTTCTTTGGAAATTCAGACGGTGGATCTTGGGTGGTGGCTGCAGGGGGCCTGCGACCGGTCCTGCCATGAAGATGCTAACTGCACGGAGCTTAAATCGCCGAGTAATGGGATGTTGTCTCATCGTTGCCGCTGCCGGGAAGGGTTGGTCGGCGATGGGTATTTGGCCGGCACCGGCTGCCGGAAAGCTTCAAATTGCTACTCTACCAAGTACATTATCGGCGAATGCGGAACATCAACAACACCCACAAGAACCGCCATCCTCATCGGAACCGTAATCGGCGGAGCCGCCGTACTACTTTCTCTCGGTTTATTCTGCTGCTTCATCCGCCGTCGTTCCAATCTCAGATCTATACACCTCAACAAAATCACCAAACGCCGCCTCACGGAAGCTACCGCCGGCGCCGGCAAATCCACCATCCACCTCTACACCTACAAAGAGATCCAAAAGGCCACCCACAACTTCTCCGACGACCATCGCCTCGGCACCGGCGCATACGCCACCGTCTACGCCGGAAAATTACGCAATGGCGAATGGGTTGCCATCAAACGCCTCAAAAATCGAGATCCCGACACCATCCAACAAGTCCTCAACGAAATCAACCTCATCTCCTCCGTCAGCCACCCTAACCTCGTCCGCCTCCTCGGCTGCTCGATGGAATCCGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTCTCAGCATTTACAGAAACAGAGAGGCACCGGCCTCCCCTGGCTCGTCCGCCTCGACATCGCCGTCGAAACCGCTAACGCAATCGCCCACCTACATTCTGCAATTAATCCCCCGATCTTCCACAGAGATATCAAATCCAGCAACATACTACTCGATCAGAATCTCAAATCGAAAGTAGCGGATTTCGGGCTTTCAAGATTGGGAATGGCCGAAATTTCGCACATCTCGACGGCCCCTCAAGGGACACCGGGGTATCTCGATCCGCAATACCATCAAGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTGGTCCTCGTGGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTAAATTTGGCAACTCTGGCCGCCGATAGGATCGGGAATGGGCGGCTGAGTGAAATTGTGGACCCGTTGATGGAGATGGAGGGCGATGAATGGGGAATTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCTTGGCGTTTGATAGGGATGTGAGGCCGTCGATGGTGGAGGTGGCGGCGGAGCTGGAAGAGATCCGGCGGAGCAGGTGGGATGAAAGGGGATTGAAGTGTAAGGAAATGGAATCAGTAGTTGAAAGTGGGAGCTCCAAGTCTAGCCATGGAGGTGGGGATTACTTTTCAAGAGGCTCTGTTGAAGATTCATGGCGGAGTGAACAGAGCTCGCCGTCGTCCAGTAGTTTGCTAAATAATGTCCTTTTATGA 1659 53.83 MVQTKFESPDCSLNRSSISCYTQNGTASAGFLDFKNLTGTHCDYLLSSISAEALNSNASAGISLEIQTVDLGWWLQGACDRSCHEDANCTELKSPSNGMLSHRCRCREGLVGDGYLAGTGCRKASNCYSTKYIIGECGTSTTPTRTAILIGTVIGGAAVLLSLGLFCCFIRRRSNLRSIHLNKITKRRLTEATAGAGKSTIHLYTYKEIQKATHNFSDDHRLGTGAYATVYAGKLRNGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGTGLPWLVRLDIAVETANAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLATLAADRIGNGRLSEIVDPLMEMEGDEWGISSVEKVGEVAFRCLAFDRDVRPSMVEVAAELEEIRRSRWDERGLKCKEMESVVESGSSKSSHGGGDYFSRGSVEDSWRSEQSSPSSSSLLNNVLL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26616606 26623315 - ClG42_08g0170500.10 Clacu08g1705 256047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1705 552 ProSiteProfiles Protein kinase domain profile. 216 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1705 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1705 552 CDD STKc_IRAK 222 491 - -
Clacu08g1705 552 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524(InterPro)
Clacu08g1705 552 Gene3D Laminin 81 116 - -
Clacu08g1705 552 SUPERFAMILY Protein kinase-like (PK-like) 199 489 IPR011009 -
Clacu08g1705 552 MobiDBLite consensus disorder prediction 508 552 - -
Clacu08g1705 552 FunFam Wall-associated receptor kinase-like 20 292 500 - -
Clacu08g1705 552 MobiDBLite consensus disorder prediction 531 552 - -
Clacu08g1705 552 CDD TM_EGFR-like 143 177 - -
Clacu08g1705 552 Pfam Protein kinase domain 218 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1705 552 Gene3D Phosphorylase Kinase; domain 1 186 291 - -
Clacu08g1705 552 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 539 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Clacu08g1705 552 SMART serkin_6 216 497 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1705 552 Gene3D Transferase(Phosphotransferase) domain 1 292 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1572 Clacu-Chr6:26586358 Clacu08g1705 Clacu-Chr8:26616606 1.60E-77 dispersed
Clacu08g1705 Clacu-Chr8:26616606 Clacu11g0813 Clacu-Chr11:8049981 6.10E-80 dispersed
Clacu01g1705 Clacu-Chr1:29180050 Clacu08g1705 Clacu-Chr8:26616606 4.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73776 PF00069 Pkinase 7.70E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1705 - - - 0.0