Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1708 ATGAAATTTGGGAATTTCTTGACGATTAATTCCGATCTGAAAATCGACGACGACGACGGTGATTTTCCGACGCCGAACAGCGACGAGTCTCCGCCGAGATTTTCGCCGTGGAATCAAACTTATCCCTTTTTGAAATCTCCCTGTTTTTCCGAATTCCAAAACGGCGTTGCTCATCAGCGGAATAATAATAATAATAATTCTCTCATTGGGTCTCTTGTTCGTGAGGAAGGCCACGTGTACTCGCTAGCAACCGCCGGCGAACTTCTCTACACCGGCTCCGACAGCAAAAACATTCGAGTATGGAAAAATCTCAAGGAATTTACTGGGTTTAAATCGAGCAGTGGATTGGTTAAGGCAATTATAATCTCCGGCGAAAAAATCTTCACCGGTCACCAGGACGGCAAAATTCGGATCTGGAAAGTTGTTGTGAAAGACCCAAGCGGCGGTCACCGGCGGGCTGGGACGTTGCCGGCTATGAGAGATGTAGTAAGAAGCTCGATGAACCCTCAAAACTACGTCGTTGTGGGACGGAACCGGAGCCGGCTTTGGTTTAAGCATAGCGATGCGGTTTCGTGCTTGTGCTTGAGTGAAGACAGGACTTTATTGTATTCCTCTTCTTGGGATAAAACTTTGAAAGTATGGAGAATTTCAGATTCCAAGTGCCTCGAATCACTTACTGTTCACGACGACGCCGTCAATGCCGTCGTCGCGGCCTCCGATGGCTTGGTCATTACTGGCTCGGCTGACGGCACCGCCAAGGTATGGCGGAGACAGCATGAAGAAGAGCACGACGCAACCAAACACATACTGGAGCAAACGCTGCTGAAGCAAGACAGTGCAGTGACGGCGGTGGCCGTCAACGCCGCCGGCACGGTGGTGTACTGTGGATCCTCCGACGGGCTGGTCAACTTCTGGGAGCGAGAAAAGCGGTTGACTTACGGTGGAGCTCTAAAGGGCCACAACTTAGCAGTTCTCTGCCTCGCGGCGGCCGGAAGCTGCATGGTACTAAGCGGCGCCGCCGATAAAACCATATGCGTGTGGCGGAGGGATGGGCCTTTCCACACGTGCGTATCGGTTCTGACGGGTCACACCGGACCTGTTAAATGTTTGGCCGTCGAGGAAGATCGTCGCCTCGGCAGTCGGCGGTGGATTGCGTACAGTGGTAGCCTGGACAGATCGGTGAAGGTGTGGGAGGTTTCCGACGGCCTTGGTGGCTGA 1218 52.63 MKFGNFLTINSDLKIDDDDGDFPTPNSDESPPRFSPWNQTYPFLKSPCFSEFQNGVAHQRNNNNNNSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRIWKVVVKDPSGGHRRAGTLPAMRDVVRSSMNPQNYVVVGRNRSRLWFKHSDAVSCLCLSEDRTLLYSSSWDKTLKVWRISDSKCLESLTVHDDAVNAVVAASDGLVITGSADGTAKVWRRQHEEEHDATKHILEQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKRLTYGGALKGHNLAVLCLAAAGSCMVLSGAADKTICVWRRDGPFHTCVSVLTGHTGPVKCLAVEEDRRLGSRRWIAYSGSLDRSVKVWEVSDGLGG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26633631 26635525 + ClG42_08g0170800.10 Clacu08g1708 256050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1708 405 SUPERFAMILY WD40 repeat-like 65 401 IPR036322 GO:0005515(InterPro)
Clacu08g1708 405 Gene3D - 162 266 IPR015943 GO:0005515(InterPro)
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 ProSitePatterns Trp-Asp (WD) repeats signature. 385 399 IPR019775 -
Clacu08g1708 405 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Clacu08g1708 405 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Clacu08g1708 405 PRINTS G protein beta WD-40 repeat signature 385 399 IPR020472 -
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 220 - -
Clacu08g1708 405 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 26 400 IPR045182 -
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Pfam WD domain, G-beta repeat 76 101 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Pfam WD domain, G-beta repeat 276 305 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Pfam WD domain, G-beta repeat 355 397 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Pfam WD domain, G-beta repeat 316 347 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Pfam WD domain, G-beta repeat 185 214 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Pfam WD domain, G-beta repeat 220 255 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 255 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Gene3D - 59 154 IPR015943 GO:0005515(InterPro)
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 347 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 255 - -
Clacu08g1708 405 FunFam BnaA09g28200D protein 173 260 - -
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 402 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 SMART WD40_4 218 256 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 SMART WD40_4 267 306 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 SMART WD40_4 65 102 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 SMART WD40_4 353 398 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 SMART WD40_4 177 215 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 SMART WD40_4 310 348 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 SMART WD40_4 103 140 IPR001680 GO:0005515(InterPro)
Clacu08g1708 405 Gene3D - 267 404 IPR015943 GO:0005515(InterPro)
Clacu08g1708 405 MobiDBLite consensus disorder prediction 16 35 - -
Clacu08g1708 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1708 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0756 Clacu-Chr1:8196427 Clacu08g1708 Clacu-Chr8:26633631 1.40E-42 dispersed
Clacu02g1345 Clacu-Chr2:26478719 Clacu08g1708 Clacu-Chr8:26633631 1.60E-110 dispersed
Clacu05g2808 Clacu-Chr5:35402684 Clacu08g1708 Clacu-Chr8:26633631 2.30E-29 dispersed
Clacu07g1320 Clacu-Chr7:27978454 Clacu08g1708 Clacu-Chr8:26633631 3.70E-43 dispersed
Clacu07g1321 Clacu-Chr7:27989540 Clacu08g1708 Clacu-Chr8:26633631 9.50E-39 dispersed
Clacu11g1699 Clacu-Chr11:28237808 Clacu08g1708 Clacu-Chr8:26633631 2.70E-22 transposed
Clacu02g0586 Clacu-Chr2:5710490 Clacu08g1708 Clacu-Chr8:26633631 2.50E-106 wgd
Clacu05g2109 Clacu-Chr5:29892121 Clacu08g1708 Clacu-Chr8:26633631 5.10E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27