Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1709 ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCGAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGGAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAGTAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA 795 41.38 MFSSTTHHSHWNNFIMDYTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQEQEKDRHNGNANMKISSGVKKQNNNNNNSNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26638243 26641226 - ClG42_08g0170900.10 Clacu08g1709 256051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1709 264 MobiDBLite consensus disorder prediction 146 166 - -
Clacu08g1709 264 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 44 244 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Clacu08g1709 264 Pfam Myb-like DNA-binding domain 76 127 IPR001005 -
Clacu08g1709 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 128 IPR006447 GO:0003677(InterPro)
Clacu08g1709 264 FunFam Myb family transcription factor 73 131 - -
Clacu08g1709 264 SUPERFAMILY Homeodomain-like 72 129 IPR009057 -
Clacu08g1709 264 Gene3D - 74 131 - -
Clacu08g1709 264 MobiDBLite consensus disorder prediction 196 232 - -
Clacu08g1709 264 MobiDBLite consensus disorder prediction 212 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1709 Clacu-Chr8:26638243 Clacu09g1167 Clacu-Chr9:11281499 1.70E-32 dispersed
Clacu02g1827 Clacu-Chr2:31765013 Clacu08g1709 Clacu-Chr8:26638243 2.70E-16 transposed
Clacu05g2133 Clacu-Chr5:30060234 Clacu08g1709 Clacu-Chr8:26638243 5.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48223 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1709 - - - 0.0