Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1713 ATGGGAAATGAAGCAAAACGAGGAGGAAACAAAGCTGCTATATTTGTTTATGTGACTGAAGGGCTTGAAAATATGGCATTTGTGTCGATGACGCTGAGCCTTGTGACATATTTCAGTGGTTATATGAACTTCAGTTTGACAAAATCGGTGACCACTCTCACCAACTTCATGGGAACCACGTTTCTTCTCACACTCGTCGGCGGTTTCATCTCCGAGACTTATCTCTCAAGATTCAAAACTTGCCTTCTCTTCGCTTCCTTTGAGCTCATGGGATATTGTCTGCTAACGGCGCAGGCACATTTCCCGCACCTAAGGCCGGCACCATGCAAAGGAGCGGTGGCGGGCAGCGAGTGCGAGGCGGCGGAAAGGGGTCAGGAGGCGATTCTTTACGTGGGAATATATCTGATAGCGGTGGGAGCGAGTGGCGTGAAAGTGGCGCTGCCAGCGTTGGGGGCGGATCAATTCGACGACAGAGATCCGGGGGAGGCGGCGAAGGTGTCGAGCTTTTTCAATTGGTTCATGTTCAGCCTGACGATAGGGTCGATAGTGGGAGTGACATTGATAGCGTGGCTAAACACAGAGGTGGGTTGGGACTGGGCGTTTGTGGTTTGTAGCATTGCACTTCTTGCCGCCATTGTTATTGTGTTTTCGGGCAAGTCGTTTTATCGCAACAATGTGCCTATTGGAAGCCCCCTTCTCAGACTTCTTCAGGTCTTTGTAGCTTCAATCCGAAACAGGAAACTCCCACTTCCAGAGAATGTTAATGAACTACATGAGATTCGTGACAAAGAAGCCGCAATCCCATATGAAATCCTTGAGAAAACCGATCAATTCAGATTCTTAGACAGAGCAGCCATTATAAGGAAAGATACAAGTGCATCCATGTCAGCAAATCAACAAGGACCATGGAGACTCTGCACAGTGACACAGGTTGAAGAAACAAAGATACTAATTCGAATGCTCCCAATTATACTCAGCACCATCTTCATGGCCACCTGTATGGCTCAACTCCAAACATTCTCCATTCAACAAAGCATAACCATGGATTGCCATTTCCTGGGATTCAAAATTCCAGGCCCCTCTGTTCCCGTCATTCCCTTGCTTTTCATGTTCTTCTTTATCCCCTTTTACGAGCGTGTTTTCGTTCCTCTTGCTCGTAAAATTACCGGGATTCCCACAGGAATTCGCCACCTCCAAAGGATCGGCATTGGACTGGTACTCACTGCTGCATCAATGGCTATTGCAGGGGTTGTGGAGACTTCCCGCAAAAATGTTGCGATCAAACACGATATGGTGGATAGTTTGGAGCCTTTGCCGATGAGCGTCTTCTGGTTGGGATTTCAGTTTTGCGTATTTGGAATGGGCGATATATTCACTCTTGTAGGACTGCTGGAATTCTTTTATGCAGAAAGCTCAGCAGGGATGAAGTCGTTGAGCACAGCCATTGCTTGGTGTTCGATTGCATTCGGGTACTTCACGAGTACGGTGGTGGTGCAGGTGGTGAACAAGGCGAGTGGAGGGTGGCTGGCAAGCAACAATCTCAACAGAGACAACTTAAACTATTTCTACTGGTTACTGTCAGTGTTGAGTGTGTTGAATTTTGGGTTTTATTTGGTTTGTGCTTCTTGGTATAGGTATAAGAATGTTGAGGTCTTTCAAAACAATGCTATGGAAGAAAAGGTTGACATAGCAAGGGGGATATAG 1704 46.89 MGNEAKRGGNKAAIFVYVTEGLENMAFVSMTLSLVTYFSGYMNFSLTKSVTTLTNFMGTTFLLTLVGGFISETYLSRFKTCLLFASFELMGYCLLTAQAHFPHLRPAPCKGAVAGSECEAAERGQEAILYVGIYLIAVGASGVKVALPALGADQFDDRDPGEAAKVSSFFNWFMFSLTIGSIVGVTLIAWLNTEVGWDWAFVVCSIALLAAIVIVFSGKSFYRNNVPIGSPLLRLLQVFVASIRNRKLPLPENVNELHEIRDKEAAIPYEILEKTDQFRFLDRAAIIRKDTSASMSANQQGPWRLCTVTQVEETKILIRMLPIILSTIFMATCMAQLQTFSIQQSITMDCHFLGFKIPGPSVPVIPLLFMFFFIPFYERVFVPLARKITGIPTGIRHLQRIGIGLVLTAASMAIAGVVETSRKNVAIKHDMVDSLEPLPMSVFWLGFQFCVFGMGDIFTLVGLLEFFYAESSAGMKSLSTAIAWCSIAFGYFTSTVVVQVVNKASGGWLASNNLNRDNLNYFYWLLSVLSVLNFGFYLVCASWYRYKNVEVFQNNAMEEKVDIARGI 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26673319 26676986 - ClG42_08g0171300.10 Clacu08g1713 256055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1713 567 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 7 548 - GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Clacu08g1713 567 Gene3D MFS general substrate transporter like domains 2 553 IPR036259 -
Clacu08g1713 567 SUPERFAMILY MFS general substrate transporter 12 548 IPR036259 -
Clacu08g1713 567 Pfam POT family 78 505 IPR000109 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1713 K26548 - - csv:101219370 1012.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2483 Clacu-Chr1:35242695 Clacu08g1713 Clacu-Chr8:26673319 6.90E-146 dispersed
Clacu02g1503 Clacu-Chr2:28503458 Clacu08g1713 Clacu-Chr8:26673319 2.80E-138 dispersed
Clacu08g1054 Clacu-Chr8:20550235 Clacu08g1713 Clacu-Chr8:26673319 1.10E-103 dispersed
Clacu08g1713 Clacu-Chr8:26673319 Clacu10g0724 Clacu-Chr10:10322337 2.70E-107 dispersed
Clacu08g1713 Clacu-Chr8:26673319 Clacu05g2661 Clacu-Chr5:34249636 9.20E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g832 . . . . . . . . . Cmo12g00454 . . . Car12g00483 . . Cpe07g00456 Bhi04g00300 . . . . . Lcy13g2023 Cla08g01532 Cam08g2025 Cec08g1599 Cco08g1735 Clacu08g1713 . Cre08g1494 . . . Cone20ag0168 . . . Cme03g01997 . . . . . . . . . . . Cma12g00513 . . . . . . . . . . . . . . . . . . . Lsi08g01434 Csa02g02006 Chy03g01503 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007975 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 11 1 1 1 1 1 1 0 1 1 1 1 1 35