Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1718 ATGCCTTTCTTTCACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGTACCCAATTCTGAATTTTCCGTTGGACTACCGGAACCGCTCGTTCAACGGCGGCTCACCAGACAGAGGAAGCTCCGGCATCTTACGGATAGGGACGTTGGCTTTGAACACCCCCGATCATCTCCCGATTGCCCCGATTTTTCGGCAAAACCTAGATCGCCTCTAGGGGGTTCCGAACGTTGGTCCTCGTCGGCTTTGCCCCTGCCTTTGCCTCTTCCGGAGTTCTTTCCGGTTCAGAGCCCGGAGTCCGGTTCTTGGAATTCTGGCCAAGGGCGTGTTGGATCGCCTATTGAAACTCCGGTCCGAAATTCCGCTATTAAAACTGTTAGGAAGAACTCTGATCGTGCAACAACGAATGTAAGTAAAAGTTTGGGCCACAATCAAAGGCGAGTTGCTATAGATTTGACCTTGGAAGTTAATAATGGCAATTCAGGAGGGGCCGGGGCTACCACATTTACAAGCCCTCAAAGCCTCTCTGTGAATCCGGAGAAATCGAATCCGAATAAGGAGTTTCTTTTTGGTTGTTCAGATCAGCTTCCAAACAACAAAGGCAGGGGTTCCCCTACTTATCCGAGTATTGAAAGGGGTAACTACGATTTGACACCTAAGAATTCGTCGTCAAAGAGTGCGCCAACGAGCATTTTGCCGAGTCCTGCTGTTAGCCCACGAAGAACACACACTGGAAATTTTTTTGTTTCTGGTTTGACTCACCATGAATACCAGGAATCTCCTTCTAATAATTCTCCTAAAGTACCACCCCTTAAAACTGCACATAGTTCTCAACCTTCCCCTCTCCATAGCCCGATAGCCCGAGGTTCCATAAGCAATCCCAGATCTCCTAATGATGTGACATTTCTCCCACATCCCAAGTTACAAAAAGATAGTAGTATAGATCGGTCTGAAAGCCATGGTCATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCATTAGTAGCCTCTTCACAAGCATCTCCACAATCTCTTCCGTCAAATGTTCATCATGTTTTTGAGAAGCCATACATTTCATCTATGAAAGGTCAGTGGCAAAAAGGAAAGCGAATTGGGCGTGGTACATTCGGAAGCGTTTATCTAGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATCTGCTGAATGTATGAAGCAACTAGAGCAGGAAATTAAAGTCCTCAGTCAGCTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGGTGATCGTTTCTATATATATTTGGAGTATGTTCATCCTGGTTCAATAAATAAATATGTTCGTGAACATTGTGGAGCCATTACAGAATCTATTGTTCGCAATTTCACCCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAGACAATTCACAGAGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGAACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAAAGATGCCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGTCTGAGTTTGAAGGGCATCAAGCTATGTTCAAGGTGTTGAATAAAACCCCGCCTACCCCAGAAAAGCTATCTCCTGAAGGGAAAGACTTCCTCCAGTGTTGCTTTCAGAGGAATCCAGCTGACAGACCAACAGCCTCGGTGCTCCTTGACCATCCTTTCTTAAGATCCTCAAATGACTCAAATGTTTCAATCCCCACGTCATCATTTTCAACAATGAACCTCTTGGAAAAATTGTTGAGTCCAAAGGACCCGCTTGATCCCAAAGGAGATCAGGCACAAAACTCTCCTGGAACTTCGGCTTCAAATGATTATTTGCTGTGCCGTAGTCCTTCAACGAACATTGCAAGCAATGTTCCTGCCAATGCTGTTACCAATCATCACTTTTCTATTTCAAGGACTCATAAAAGGGAAGTGCTGCACCTCTGA 2136 44.85 MPFFHKSASNSRLQQKVPNSEFSVGLPEPLVQRRLTRQRKLRHLTDRDVGFEHPRSSPDCPDFSAKPRSPLGGSERWSSSALPLPLPLPEFFPVQSPESGSWNSGQGRVGSPIETPVRNSAIKTVRKNSDRATTNVSKSLGHNQRRVAIDLTLEVNNGNSGGAGATTFTSPQSLSVNPEKSNPNKEFLFGCSDQLPNNKGRGSPTYPSIERGNYDLTPKNSSSKSAPTSILPSPAVSPRRTHTGNFFVSGLTHHEYQESPSNNSPKVPPLKTAHSSQPSPLHSPIARGSISNPRSPNDVTFLPHPKLQKDSSIDRSESHGHVNAHPLPLPPPLVASSQASPQSLPSNVHHVFEKPYISSMKGQWQKGKRIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECMKQLEQEIKVLSQLKHPNIVQYYGSEIIGDRFYIYLEYVHPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPNWMAPEVIKAAMLKDANPDLALAVDIWSLGCTIIEMLNGKPPWSEFEGHQAMFKVLNKTPPTPEKLSPEGKDFLQCCFQRNPADRPTASVLLDHPFLRSSNDSNVSIPTSSFSTMNLLEKLLSPKDPLDPKGDQAQNSPGTSASNDYLLCRSPSTNIASNVPANAVTNHHFSISRTHKREVLHL 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26694640 26699038 + ClG42_08g0171800.10 Clacu08g1718 256060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1718 711 MobiDBLite consensus disorder prediction 162 182 - -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 96 135 - -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 1 79 - -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 41 55 - -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 117 135 - -
Clacu08g1718 711 FunFam Mitogen-activated protein kinase kinase kinase 5 361 661 - -
Clacu08g1718 711 ProSitePatterns Protein kinases ATP-binding region signature. 370 393 IPR017441 GO:0005524(InterPro)
Clacu08g1718 711 MobiDBLite consensus disorder prediction 162 346 - -
Clacu08g1718 711 Gene3D Transferase(Phosphotransferase) domain 1 361 652 - -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 661 675 - -
Clacu08g1718 711 SUPERFAMILY Protein kinase-like (PK-like) 341 656 IPR011009 -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 650 675 - -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 7 21 - -
Clacu08g1718 711 SMART serkin_6 364 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1718 711 Pfam Protein kinase domain 365 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1718 711 MobiDBLite consensus disorder prediction 214 298 - -
Clacu08g1718 711 ProSiteProfiles Protein kinase domain profile. 364 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1718 711 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 21 629 IPR050538 -
Clacu08g1718 711 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0915 Clacu-Chr3:11710322 Clacu08g1718 Clacu-Chr8:26694640 2.80E-56 dispersed
Clacu05g0965 Clacu-Chr5:8561300 Clacu08g1718 Clacu-Chr8:26694640 1.10E-89 dispersed
Clacu06g0585 Clacu-Chr6:6673429 Clacu08g1718 Clacu-Chr8:26694640 5.20E-59 dispersed
Clacu08g1718 Clacu-Chr8:26694640 Clacu09g0516 Clacu-Chr9:4424756 1.40E-31 dispersed
Clacu01g1732 Clacu-Chr1:29492811 Clacu08g1718 Clacu-Chr8:26694640 1.30E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73777 PF00069 Pkinase 2.60E-69 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1718 - - - 0.0