Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1734 ATGCAAAATTTCAGCGCCTCTCCTCCTCAATCTTTCTTACCCTCGAAGCAGATCGATCCGATGGATCTTCACGCCAAATCCAGAGCTAGGCCGCATCCGGCGGTTCCGACGGCGGTGATGGAGCTAACGTGCACCGGAGGATTGCAATTTTTCGTTATCATGGAGATCGATGATTTGGACGACGAGGAGTTGGCATTTTCAAGGAACTATTTTTTGGCTAAGGAATTGGGCGGCTCCAAAAAGAAATCTTCTGGGAAACTCGCCGACATTGACGTCGTCGACGAACAGGAATTGAGGGCGGCGGCGGCGAATATTGAGCCTAAGCACGAGAAAGAGATTGCGGCTCTGATATCAAGCTACAAGAGTTTGTACTCGAAATGGGTCTTTGAGCTCAGATGTGGTTTTGGCCTTCTAATGTATGGATTTGGGTCTAAGAAGGCTTTGATTGAAGATTTTGCTTCGACAGCATTGATGGATTATTCTGTAATAGTTGTTAATGGCTATCTTCAATCAGTGAATATTAAACAGGTTATAGTAGCCATAGCTGAAGTATTGTCAGATCAGTTGAAATCCCGACTCAAAAATGCATCAGGGCGCACACCTAATGTACATCAGTCATTTACTTCGCGATCCATGGATGATCTGTTTACATTTTTGAATGGATCAAATGAGGAAGACAAGGATTGTTTTGTTTGTGTTTTGATACACAACATTGATGGGCCTGGGTTAAGAGATTCTGAAATGCAAGAGTATCTTGCACGAGTTGCTGCCTGTTCCCATGTTCGAATTATTGCCTCCGTTGACCACGTGAATTCACCACTTTTGTGGGACAAGAAAATGGTTCACACACAATTTAACTGGTTATGGTATCATGTTCCAACATTTGCCCCTTACAAGATTGAAGGAATGTTCTTCCCTTTGATTCTTGCACATGGTGGTACTGCTCAAAGTGCGAAAACTGCTACAATAGTTTTACAGAGTTTGACGCCCAATGCACAAAGTGTTTTTAAAGTTCTTATAGAACATCAGCTGTCTCATCCTGACGAAGAAGGTATGCCAATCAATAATCTGTATGCAATTTGTCGAGAGCGCTTCCTAGTCAGCAGCCAGGTAACACTGAACTCTCATTTGACCGAATTTAAAGACCACGAGCTGGTGAAGACCAGGAGGCATTCTGATGGTCAAGATTGCTTCTCGTCATTTTCTGCCATTCGCCAAACCCTACGAAGCGAGGAAGAAGAAGAAGAAGAAGAGAACATGGGAATCTCTAACCTCTCATACGAGGAATGTCGTCGCAAAAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGACTCTTCCCCTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGGCTCGCGTGATGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAATCAGCCCCTGTTTACGCTGAAGTTCTTGTTGATCGGCTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTCTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTCAGGAGTTACAATCCGGATTGGAGCCGAATTATCCAATCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTGCTCATTTCTGCAAGATGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGCCTTTTCAATTGCTCATAAGTTGGCAGATGGAGATGCTGTGGTTTTTCAACACATTAAACCTACAGCCTGCAAGGTCTACATTTTCAGGGCGGATGGTTCTAAAGAGGATAGTGATTCTAACAGTAGCTAA 1947 44.07 MQNFSASPPQSFLPSKQIDPMDLHAKSRARPHPAVPTAVMELTCTGGLQFFVIMEIDDLDDEELAFSRNYFLAKELGGSKKKSSGKLADIDVVDEQELRAAAANIEPKHEKEIAALISSYKSLYSKWVFELRCGFGLLMYGFGSKKALIEDFASTALMDYSVIVVNGYLQSVNIKQVIVAIAEVLSDQLKSRLKNASGRTPNVHQSFTSRSMDDLFTFLNGSNEEDKDCFVCVLIHNIDGPGLRDSEMQEYLARVAACSHVRIIASVDHVNSPLLWDKKMVHTQFNWLWYHVPTFAPYKIEGMFFPLILAHGGTAQSAKTATIVLQSLTPNAQSVFKVLIEHQLSHPDEEGMPINNLYAICRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFSSFSAIRQTLRSEEEEEEEENMGISNLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQVKARVMQKQLVVVRRSSRVAKQSAPVYAEVLVDRLAIPRRISRARDFSDQFYASDEARKNAFERAQELQSGLEPNYPICIKSMVRSHVSGCFWLGLPAHFCKMHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKAFSIAHKLADGDAVVFQHIKPTACKVYIFRADGSKEDSDSNSS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26807559 26814177 + ClG42_08g0173400.10 Clacu08g1734 256076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1734 648 Pfam B3 DNA binding domain 547 636 IPR003340 GO:0003677(InterPro)
Clacu08g1734 648 CDD B3_DNA 544 635 IPR003340 GO:0003677(InterPro)
Clacu08g1734 648 SMART B3_2 546 637 IPR003340 GO:0003677(InterPro)
Clacu08g1734 648 Pfam Origin recognition complex subunit 2 84 398 IPR007220 GO:0000808(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Clacu08g1734 648 ProSiteProfiles B3 DNA-binding domain profile. 546 637 IPR003340 GO:0003677(InterPro)
Clacu08g1734 648 Gene3D - 520 638 IPR015300 -
Clacu08g1734 648 SUPERFAMILY DNA-binding pseudobarrel domain 540 637 IPR015300 -
Clacu08g1734 648 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 2 68 398 IPR007220 GO:0000808(InterPro)|GO:0003688(PANTHER)|GO:0005634(InterPro)|GO:0005664(PANTHER)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1734 Clacu-Chr8:26807559 Clacu08g1735 Clacu-Chr8:26818119 8.40E-97 tandem
Clacu02g0627 Clacu-Chr2:6159661 Clacu08g1734 Clacu-Chr8:26807559 1.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48227 PF04084 ORC2 2.00E-93 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1734 K02604 - csv:101204992 640.188