Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1735 ATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCTGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGACGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGATCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGTTTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCGATGAGTATTCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCCGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCTAA 690 44.2 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDDARKNAFERAEQLQSGLDPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYSTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26818119 26819977 + ClG42_08g0173500.10 Clacu08g1735 256077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1735 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Clacu08g1735 229 Coils Coil 6 26 - -
Clacu08g1735 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Clacu08g1735 229 SUPERFAMILY DNA-binding pseudobarrel domain 120 218 IPR015300 -
Clacu08g1735 229 Gene3D - 102 219 IPR015300 -
Clacu08g1735 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Clacu08g1735 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Clacu08g1735 229 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1311 Clacu-Chr2:26134687 Clacu08g1735 Clacu-Chr8:26818119 6.70E-30 dispersed
Clacu05g1152 Clacu-Chr5:10582382 Clacu08g1735 Clacu-Chr8:26818119 1.70E-33 dispersed
Clacu08g1734 Clacu-Chr8:26807559 Clacu08g1735 Clacu-Chr8:26818119 8.40E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48228 PF02362 B3 3.60E-13 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1735 - - - 0.0