Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1755 ATGGACGGTGCTGATGGGACTGTGAGGCTTGGGGCAGTGAACTTGAAGCCGGATCGGAGCGCCTTTGATTTAGGCCCCGATGTGTCTGTTTCGTCTCCGGTCACAAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATAGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAAGACAGACGAAGAACTCTTCAACGAAGAGCGCAAGAAGCTCAGATGTCGGCTGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAGCAATTAACAGTTATTGGTAAAGGTGCATTCGGCGAGGTTAGATTGTGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGATTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGACAAGTATTCAAGTATACTTTTGAATGAGCAAGACCTAACTGCCCAGCAGGCCAAAAATGAAGGTCAAGGTCATGCTGACTCTAATGGATCCCATTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTACTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTTCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCAAGAATTTCAGAGGAAGCTAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGCATTCAATGGGATAAGCTGTATGAAATGGAAGCTGCATACAAACCAACTGTTACTGGAGAACTAGACACTCAGAACTTTGAGAAGTTTCCTGAAGTTCAAGACCCTCCCTCTGAAATGCCAACTGTTGGACCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACAGATGTGCATTCAAACACATCATCAAAATCACCATCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACAGTGATACCAGAAGTTGAACAAAAGCAGGAAGCATAA 1572 42.11 MDGADGTVRLGAVNLKPDRSAFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRTLQRRAQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNEQDLTAQQAKNEGQGHADSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPRISEEAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDVHSNTSSKSPSLVSLLGRIDLQETVIPEVEQKQEA 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26969934 26974629 - ClG42_08g0175500.10 Clacu08g1755 256097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1755 523 Gene3D Phosphorylase Kinase; domain 1 77 191 - -
Clacu08g1755 523 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
Clacu08g1755 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 478 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu08g1755 523 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Clacu08g1755 523 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1755 523 Gene3D Phosphorylase Kinase; domain 1 430 441 - -
Clacu08g1755 523 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Clacu08g1755 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1755 523 SMART serkin_6 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1755 523 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1755 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1755 523 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Clacu08g1755 523 Coils Coil 57 101 - -
Clacu08g1755 523 CDD STKc_NDR_like 106 475 - -
Clacu08g1755 523 Pfam Protein kinase domain 308 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1755 523 Pfam Protein kinase domain 108 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1755 523 SUPERFAMILY Protein kinase-like (PK-like) 85 463 IPR011009 -
Clacu08g1755 523 Gene3D Transferase(Phosphotransferase) domain 1 309 429 - -
Clacu08g1755 523 CDD MobB_NDR_LATS-like 42 103 - -
Clacu08g1755 523 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Clacu08g1755 523 SMART pkinase_C_6 412 476 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1579 Clacu-Chr3:29358800 Clacu08g1755 Clacu-Chr8:26969934 1.10E-166 dispersed
Clacu06g1767 Clacu-Chr6:28215011 Clacu08g1755 Clacu-Chr8:26969934 1.10E-56 dispersed
Clacu08g1755 Clacu-Chr8:26969934 Clacu09g0792 Clacu-Chr9:7112060 9.00E-174 dispersed
Clacu08g1755 Clacu-Chr8:26969934 Clacu05g1967 Clacu-Chr5:28808871 1.60E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73778 PF00069 Pkinase 1.10E-64 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1755 K08790 - csv:101222805 1005.36