Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1760 ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGAAACGGCGGAGGAGGCGGAAGACCTCCGGCGAACTATCCATTAGCGCGACAATCATCGATCTACTCGCTGACCTTCGATGAGTTTCAGAGCATGGGGAGTATAGGCAAGGATTTTGGGTCGATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGCTGTTGATAAAGAAGGGGCTGGTAGTGTTGGTCGTAGTGGTGGGTATTTGCAGAGACAGGGCTCCTTGACGCTGCCTCGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGGCTACTGTTGCTTCTAATTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAGGATACTCAGGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTTCAGCGGCAGGCTAAAGTTCCTGAGAATAATAATCATATTCCAATTCAATCGTCGAACTTATCGCTGAATGTCAATGGAGTCAGAACACATCAGCCGCAGCCAATTTTTCCAAAGCAGCCTGCTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGGGGAATTATGGGGATTGGAGATCAAGGGTTGAATACAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATATAGCAGCTGCTCCGTTACCTATTGCAACAGAATCGCCAAGGGACCAACTATCATCTGATGGGATTGGTAAAAGCAATGGTGATACCTCGTCTGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGGGGGAGGAGAAGTAACGGAATTGTCGACAAGGTTGTCGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCCGCTGCAAGATCGCGGGCTCGAAAGCAGGCCTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATAAAGAAGCGATGCTTAAGACGAACGCAGACTGGCCCATGGTGCCGTGTAGCATATGTCTCAAGGCGTCTTGCTTGCAGAGTATCCTCCTCCACCCTCTGCCATGGAGAGGGAAATAAGTTTTTTGTGGCATTTCCTGATATGGCCCGACTGCTGCTGTGGTTGTGGGTAAATGTCAATCCTGAATGCAGGATTCATCAGCGTTCAATTCATTGCATGTCAACTGCTGCAACTGCCGTTCGATTTTCCTTTGTAATCTCTGCATCATGA 1461 47.43 MNFKDFGNDPSAGNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVDKEGAGSVGRSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGATVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIGFQRQAKVPENNNHIPIQSSNLSLNVNGVRTHQPQPIFPKQPAVTYGSQLALPSDGQLASPGIRGGIMGIGDQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPRDQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPWCRVAYVSRRLACRVSSSTLCHGEGNKFFVAFPDMARLLLWLWVNVNPECRIHQRSIHCMSTAATAVRFSFVISAS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27025905 27028919 + ClG42_08g0176000.10 Clacu08g1760 256102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1760 486 MobiDBLite consensus disorder prediction 1 26 - -
Clacu08g1760 486 CDD bZIP_plant_BZIP46 333 385 - -
Clacu08g1760 486 MobiDBLite consensus disorder prediction 286 315 - -
Clacu08g1760 486 Gene3D - 331 387 - -
Clacu08g1760 486 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 410 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Clacu08g1760 486 SMART brlzneu 329 393 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1760 486 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 331 388 - -
Clacu08g1760 486 Pfam bZIP transcription factor 333 385 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1760 486 Coils Coil 349 386 - -
Clacu08g1760 486 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1760 486 SUPERFAMILY Leucine zipper domain 333 381 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1760 486 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 382 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1760 486 MobiDBLite consensus disorder prediction 287 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1760 Clacu-Chr8:27025905 Clacu10g1879 Clacu-Chr10:32417419 1.50E-42 dispersed
Clacu08g1008 Clacu-Chr8:20117921 Clacu08g1760 Clacu-Chr8:27025905 2.00E-32 transposed
Clacu10g0049 Clacu-Chr10:885255 Clacu08g1760 Clacu-Chr8:27025905 6.60E-11 transposed
Clacu02g0641 Clacu-Chr2:6356904 Clacu08g1760 Clacu-Chr8:27025905 1.20E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48229 PF00170 bZIP_1 4.80E-13 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1760 K14432 - csv:101223043 716.842