Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu08g1764 | ATGTCCAAGAACCGCGGCGGACTCCTCCCAAATTCCCTCGCGGCCATTAATTTTCTCCAAGGGAAGAAGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAGTATCCTGCTGTGCAATCCTGTGTTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCGGAGAAAGGAAACTTTATGATCGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAGGAAGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCTGGTGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCCGGTCTCTACCGTGGATTTAACATTTCTTGTGTTGGTATCATCGTTTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACTGGGAAGATGCAGGATAGCTTCTTCGCTAGCTTTGCCTTGGGTTGGCTCATCACCAATGGTGCCGGTCTTGCATCTTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATTTTGAAGAACGAAGGTGCCAAGTCTCTCTTTAAGGGTGCTGGTGCGAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGCCGCGGCAGACTCCTCCCAAATTCTCTCGCGGCCATCAGTTTCTCCCAAGGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTACCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGCGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTTTAGGAACCCTGCATTTTATCCGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAGTATCCTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCGGCGGAGAAAGGAAACTTTATGATCGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAGGAAGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCTGGTGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCTGGTCTTTACCGTGGATTTAACATCTCTTGTGTTGGTATCATCGTTTACCGTGGTTTATACTTTGGAATGTATGATTCTCTCAAGCCTGTTTTGTTGACCGGGAAGATGCAGGATAGCTTCTTCGCTAGTTTTGCCTTGGGTTGGCTCATCACCAATGGTGCTGGTCTCGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTACGATAAGTTGCAGGTGATTGTCTTTGGGAAGAAATATGGATCTGGTGGTGCCTAA | 2310 | 47.23 | MSKNRGGLLPNSLAAINFLQGKKNPALYQRRASISNHTNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQPRQTPPKFSRGHQFLPREEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGFRNPAFYPRRASISNHTNAAFQYPATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA | 769 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 27081055 | 27090170 | + | ClG42_08g0176400.10 | Clacu08g1764 | 256106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu08g1764 | 769 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 180 | 272 | IPR018108 | - | |
| Clacu08g1764 | 769 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 465 | 766 | IPR002113 | GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Clacu08g1764 | 769 | FunFam | ADP,ATP carrier protein, mitochondrial | 470 | 765 | - | - | |
| Clacu08g1764 | 769 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 672 | 758 | IPR018108 | - | |
| Clacu08g1764 | 769 | Gene3D | Mitochondrial carrier domain | 78 | 367 | IPR023395 | - | |
| Clacu08g1764 | 769 | Gene3D | Mitochondrial carrier domain | 470 | 765 | IPR023395 | - | |
| Clacu08g1764 | 769 | PRINTS | Mitochondrial carrier protein signature | 289 | 311 | IPR002067 | GO:0055085(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Mitochondrial carrier protein signature | 80 | 93 | IPR002067 | GO:0055085(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Mitochondrial carrier protein signature | 143 | 163 | IPR002067 | GO:0055085(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Mitochondrial carrier protein signature | 195 | 213 | IPR002067 | GO:0055085(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Mitochondrial carrier protein signature | 245 | 263 | IPR002067 | GO:0055085(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Mitochondrial carrier protein signature | 93 | 107 | IPR002067 | GO:0055085(InterPro) | |
| Clacu08g1764 | 769 | SUPERFAMILY | Mitochondrial carrier | 467 | 754 | IPR023395 | - | |
| Clacu08g1764 | 769 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 572 | 664 | IPR018108 | - | |
| Clacu08g1764 | 769 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 467 | 560 | IPR018108 | - | |
| Clacu08g1764 | 769 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 280 | 366 | IPR018108 | - | |
| Clacu08g1764 | 769 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 75 | 168 | IPR018108 | - | |
| Clacu08g1764 | 769 | SUPERFAMILY | Mitochondrial carrier | 75 | 362 | IPR023395 | - | |
| Clacu08g1764 | 769 | FunFam | ADP,ATP carrier protein, mitochondrial | 78 | 372 | - | - | |
| Clacu08g1764 | 769 | PRINTS | Adenine nucleotide translocator signature | 121 | 142 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Adenine nucleotide translocator signature | 180 | 193 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Adenine nucleotide translocator signature | 77 | 89 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Adenine nucleotide translocator signature | 285 | 301 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Clacu08g1764 | 769 | PRINTS | Adenine nucleotide translocator signature | 154 | 166 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Clacu08g1764 | 769 | Pfam | Mitochondrial carrier protein | 672 | 760 | IPR018108 | - | |
| Clacu08g1764 | 769 | Pfam | Mitochondrial carrier protein | 280 | 363 | IPR018108 | - | |
| Clacu08g1764 | 769 | Pfam | Mitochondrial carrier protein | 572 | 666 | IPR018108 | - | |
| Clacu08g1764 | 769 | Pfam | Mitochondrial carrier protein | 467 | 564 | IPR018108 | - | |
| Clacu08g1764 | 769 | Pfam | Mitochondrial carrier protein | 75 | 172 | IPR018108 | - | |
| Clacu08g1764 | 769 | Pfam | Mitochondrial carrier protein | 180 | 274 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu04g1216 | Clacu-Chr4:26332312 | Clacu08g1764 | Clacu-Chr8:27081055 | 4.60E-109 | dispersed | |
| Clacu07g0235 | Clacu-Chr7:2776630 | Clacu08g1764 | Clacu-Chr8:27081055 | 8.30E-161 | dispersed | |
| Clacu08g1764 | Clacu-Chr8:27081055 | Clacu08g1862 | Clacu-Chr8:27913814 | 2.00E-52 | dispersed | |
| Clacu08g1764 | Clacu-Chr8:27081055 | Clacu08g1866 | Clacu-Chr8:27936946 | 4.00E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu08g1764 | K05863 | - | csv:101203733 | 718.768 |