Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1765 ATGTCTAATTATGCTTTCTTGAATGACCAGCTCTCGAAGCGGACCTCCATTTTCGGTTTGCGCTTGTGGGTTGTTTTGGGTATTTGCGTTGGTGCCGCCATTGTTATCGTTCTGTTCCTCATTTCGTTATGGTTCACTTCCAGGCGCAACAGTTCCAATAAATCTAAACCCTCTCTGAACCCCACTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATCGATCATTCTCGGAATCCAACTCATTCTGACTCTAAAGTTCAATTAGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCAACGCTGCTTCAGACGGAAGAAGGGAGCCCACCTAGTGGTCGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCCGGAGAGAGGTGGCGGTTCGTCTCACGGTAGCGGAGAGGCTAGGTCTGGTGACCAGGCGCCAATGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTTGAGTATGCTACTAATAGTTTTGCGGATGAGAATGTAATTGGTGAGGGCGGATATGGTATTGTGTACCGTGGCGTTATGGAGGACAACACTGTGGTTGCTATCAAAAATTTGCTCAATAACAGAGGACAGGCTGAGAAGGAGTTTAAAGTTGAAGTAGAAGCAATTGGACGCGTACGCCACAAGAATCTGGTGCGTTTGCTCGGCTACTGTGCTGAAGGAGCTCATAGGATACTTGTCTATGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTCACATGGGACATTCGAATGAATATAATTGTTGGAACAGCAAAAGGGTTAACATACCTCCATGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTCGGGCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTATGTAACAACTCGGGTGATGGGAACTTTTGGATATGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTCGGTATCCTCATCATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTAAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCTAAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTAGTAGCTTTACGCTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGAGCAACCCAAGCAAGCCGACATCTACGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA 1566 46.3 MSNYAFLNDQLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPTIPNVSKEIQEIRIDHSRNPTHSDSKVQLASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMAVPEVSHLGWGHWYTLRELEYATNSFADENVIGEGGYGIVYRGVMEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPKKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLRRKQELEEQQPREPHTLR 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27093024 27095416 - ClG42_08g0176500.10 Clacu08g1765 256107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1765 521 MobiDBLite consensus disorder prediction 499 521 - -
Clacu08g1765 521 SUPERFAMILY Protein kinase-like (PK-like) 162 453 IPR011009 -
Clacu08g1765 521 MobiDBLite consensus disorder prediction 125 154 - -
Clacu08g1765 521 MobiDBLite consensus disorder prediction 476 521 - -
Clacu08g1765 521 CDD STKc_IRAK 187 453 - -
Clacu08g1765 521 ProSiteProfiles Protein kinase domain profile. 181 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1765 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1765 521 Gene3D Transferase(Phosphotransferase) domain 1 257 463 - -
Clacu08g1765 521 FunFam Probable serine/threonine-protein kinase At1g01540 161 256 - -
Clacu08g1765 521 PANTHER OS01G0323000 PROTEIN 6 488 IPR052232 -
Clacu08g1765 521 FunFam Putative receptor-like serine/threonine-protein kinase 257 467 - -
Clacu08g1765 521 Pfam Protein kinase domain 183 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1765 521 Gene3D Phosphorylase Kinase; domain 1 155 256 - -
Clacu08g1765 521 SMART serkin_6 181 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1765 521 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0159 Clacu-Chr5:1509447 Clacu08g1765 Clacu-Chr8:27093024 1.80E-169 dispersed
Clacu05g0987 Clacu-Chr5:8770474 Clacu08g1765 Clacu-Chr8:27093024 3.20E-73 dispersed
Clacu08g1765 Clacu-Chr8:27093024 Clacu09g2270 Clacu-Chr9:37442004 1.30E-145 dispersed
Clacu01g1762 Clacu-Chr1:29774906 Clacu08g1765 Clacu-Chr8:27093024 7.10E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73779 PF00069 Pkinase 2.50E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1765 - - - 0.0