Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1770 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.19 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27124249 27125147 - ClG42_08g0177000.10 Clacu08g1770 256112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1770 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Clacu08g1770 230 Gene3D - 95 162 - -
Clacu08g1770 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Clacu08g1770 230 CDD homeodomain 96 157 IPR001356 GO:0003677(InterPro)
Clacu08g1770 230 MobiDBLite consensus disorder prediction 64 102 - -
Clacu08g1770 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 230 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Clacu08g1770 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677(InterPro)
Clacu08g1770 230 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Clacu08g1770 230 FunFam WUSCHEL-related homeobox 4 95 162 - -
Clacu08g1770 230 MobiDBLite consensus disorder prediction 153 183 - -
Clacu08g1770 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1119 Clacu-Chr4:25462212 Clacu08g1770 Clacu-Chr8:27124249 1.30E-23 dispersed
Clacu06g1538 Clacu-Chr6:26300750 Clacu08g1770 Clacu-Chr8:27124249 6.90E-23 dispersed
Clacu08g1770 Clacu-Chr8:27124249 Clacu11g0781 Clacu-Chr11:7645496 7.00E-22 dispersed
Clacu08g1770 Clacu-Chr8:27124249 Clacu03g0164 Clacu-Chr3:1773911 4.00E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48232 PF00046 Homeodomain 9.80E-19 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1770 - - - 0.0