Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1785 ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAATGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGATGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACGATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTTTTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCTGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTTGTATTTCTTGCAAAATTTATTATCCGACCAAAGCTGCATCCTTGGGGTCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG 1122 43.76 MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSMAPQKRKAKSQMTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27240746 27242563 - ClG42_08g0178500.10 Clacu08g1785 256127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1785 373 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Clacu08g1785 373 PIRSF Cyclin_A_B_D_E 1 367 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Clacu08g1785 373 SMART Cyclin_C_2 239 362 IPR004367 -
Clacu08g1785 373 Pfam Cyclin, C-terminal domain 239 361 IPR004367 -
Clacu08g1785 373 CDD CYCLIN_AtCycA-like_rpt2 239 353 - -
Clacu08g1785 373 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Clacu08g1785 373 Gene3D - 108 358 - -
Clacu08g1785 373 FunFam Cyclin A1 226 358 - -
Clacu08g1785 373 SMART cyclin_7 146 230 IPR013763 -
Clacu08g1785 373 SMART cyclin_7 243 331 IPR013763 -
Clacu08g1785 373 FunFam Mitotic cyclin 6 124 224 - -
Clacu08g1785 373 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Clacu08g1785 373 Gene3D - 124 237 - -
Clacu08g1785 373 SUPERFAMILY Cyclin-like 239 364 IPR036915 -
Clacu08g1785 373 PANTHER CYCLINS 86 349 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0740 Clacu-Chr8:17279867 Clacu08g1785 Clacu-Chr8:27240746 4.00E-78 dispersed
Clacu08g1445 Clacu-Chr8:24473222 Clacu08g1785 Clacu-Chr8:27240746 4.20E-68 dispersed
Clacu08g1785 Clacu-Chr8:27240746 Clacu09g0236 Clacu-Chr9:2184445 3.30E-77 dispersed
Clacu02g0700 Clacu-Chr2:7212989 Clacu08g1785 Clacu-Chr8:27240746 2.60E-79 wgd
Clacu05g2234 Clacu-Chr5:30812053 Clacu08g1785 Clacu-Chr8:27240746 2.80E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1785 K06627 - csv:101206145 696.041