Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1790 ATGGGAGCTCAAACCCCTGTTGTTGAGTTTGCCATATTGGTTGCAATTTTAGCTTTCACACCCTCATTTTCCTTGGTTGGATCAGCCAGTTTGAGCATTGAAACAGACAAACAGGCCTTGATTTCAATCAAATCTGGATTTACCAATCTCAAGCCTTCAAATCCTCTGTCTTCTTGGGATAATTCAAACTCTTTCCCTTGCAACTGGACTCGTGTCACTTGCAACAAAGATGGCAATAGAGTTGTTGGTCTTGATCTTTCAAGCTTGCAACTTTCAGGCTCCTTAGACCCTCATATTGGCAACCTCACTTTCCTTCATTCCCTTCAGCTTCAAAACAACCTCTTAACAGGACTAATTCCACATCAAATTTCTAACCTTTTTCGCCTCGTTCTCCTCAACATGAGCTTCAACTCCCTTGAAGGTGGATTCCCTTCCAACATCAGTGCCATGGCTGCCCTTGAGGCCCTTGACTTAACTTCCAATAACTTAACATCCACTCTTCCTGATGAGCTCAGTCTTTTAACCAACCTTAAAGTCTTGAAATTGGCACAAAATCATCTTTTTGGTGAAATCCCACCTTCATTTGGCAACCTTTCTTCTCTTGTCACCATAAATTTTGGTACAAATTCTCTTACTGGCCCAATTCCAACCGAGCTGAGTCGTCTTCGAAATCTTAAGGATCTTATCATCACCATCAACAATCTCACTGGCACTGTTCCTCCTGCCATATACAACATGTCATCTTTAGTTACTCTGGCCCTGGCTTCCAACAAACTATGGGGAACATTTCCAGTGGATATTGGTGATACACTCCCCAATCTTTTAGTCTTCAACTTCTGTTTCAATGAATTTACAGGAACAATTCCTCCTTCATTGCATAATATCACTAATATTCAAGTCATTCGTTTTGCTTACAATTTTCTTGAAGGGACAGTTCCACCAGGTTTGGACAATCTCCATAACCTTACTATGTACAATATTGGGTACAATAAGCTCAGCTCCGGCAAAGATGGGATTAGTTTCATCACTTCTTTGACAAAAAGCTCTCGCCTTTCGTTTCTTGCCATTGATGGCAACAATTTTGAAGGTCAAATTCCAGAGTCCATTGGGAATCTTTCTAAATCTCTTTCCATATTGTTCATGGGAGGGAATCGTCTCTCTGGTAATATACCTCCCACTGTTGGGAATTTAAATGGCTTGGCTTTGCTGAATTTGAGCTATAATTCATTATCAGGCGAAATCCCATCTGAGATTGGCCAATTGGAGAACCTCCAAAGCCTCGTTTTGGCCAAAAATCAGTTCTCAGGTTCCATTCCAAGCTCCTTGGGAAATCTTCAAAAGTTGACCAATCTTGATTTATCTGGAAATGAGTTAATTAGTGGCATTCCAACCTCTTTCAACAACTTCCAGAAGCTTCTTTCCATGGATTTATCCAACAATAAGCTAAATGGAAGCATACCCAAAGAAGCCCTCGATCTCCCTGCCATTATTAGATTGAACATGTCCAACAATCTTCTTACTGGTCCTCTCCCTGAGGAAATTGGGTACCTTGCAAATCTCTTACAGATTGATCTCTCCAGCAATCTCATATCTGGAGAGATTCCTTCGTCGATCAAAGGTTGGAGGAGCATGGAGAGATTGTTTATGGCGAGAAATAAGTTATCAGGTCCCATTCCCAATAATCTAGGACAACTCAGAGCCATCGAAATTATTGACCTCTCCTCAAACCTACTATCTGGTCCCATCCCTGATAATCTTCAATATCTATTAGCTCTTCAGTATCTGAATCTCTCTTTTAATGAACTTGAGGGAGAAGTTCCTAGAGGGGGAATCTTTAAAAGCAGGGCCAATGTCAGTTTACAAGGGAACTCAAAGCTTTGCTTGTATTCCTCATGTACAAAGAGTGATTCTAAACATGGCAAAGCAGTCAAAGTCATAATCTTATCGGCTGTGTTTTCAACACTGGCACTCTGCTTTATCATTGGGACGCTGATCCATTTCTTGAGGATGAAGTCAAAGACTGCACCATTCACTGAGTTGCTAGAAGATCAACATGAAATGGTGTCTTATGATGAGCTGCGTTTGGCAACAGAGAATTTCAACGAGAAAAACTTGATTGGAAAAGGGAGCTTTGGATCTGTGTATAAGGGAAATTTAAAGCAAGATATCCCTGTGGCTATTAAGGTTCTTGATGTTAACAGGACTGGTTCTATGAGGAGCTTTAAGGCCGAGTGTGAAGCTTTGAAGAACGTGAGACATCGAAATCTGGTTAAATTCATCACATCATGCTCTAGCATGGACTTCTCAAACATGGAATTTCGAGCTTTGGTTTATGAACATTTGAGCAATGGGAGCTTGGATGAGTGGGTTCATGGCCAAAGTAGTCGTGAACCTGGAATTGGGCTCAATATCCTTGAGCGAGTAAACATTGCCATCGATGTTGCTTCAGCAATAAATTACTTGCACCACGATTGTGAACTTCCTATAGTTCACTGCGATTTAAAGCCTAGCAACATTCTTCTAGATGCAGACATGACTGCAAAAGTTGGAGATTTTGGATTGGCTCGGTTACTAATGGAAAATGCAAACACTCAATCTTCCCTCACTTCCACACATGTCCTAACAGGTTCTATCGGTTATCTTCCTCCAGAGTATGGTTTTGGGATGAAGGCAACAACAGCTGGGGATGTGTACAGTTTTGGAGTAACATTGCTGGAGCTTTTTACAGGGAAGAGTCCAACAGACGAATGTTTCACTGGAGAATTGAATTTGATAAAATGGGTGGAGTCGTGTTATCCAGAAGATATAATGGAAGTGATTGATCATAAGTTGCCAGAGCTTTTTGTGGATTTGGAATACAAAGGTCGAACCATCAGTTCAGATATGCAAAAAGATTGTTTGATCAAAGTAATTGGAGTTGCACTGTCATGCACGGTGAATACTCCAGTAAACCGCATTGACATGGAGGATGTGGTTTCAAAGCTTAGGAGGGCCAAAGACAACCTTCTTCGCCCTCCAAAGAAAAGTGCTGTGTTTTAG 3039 41.16 MGAQTPVVEFAILVAILAFTPSFSLVGSASLSIETDKQALISIKSGFTNLKPSNPLSSWDNSNSFPCNWTRVTCNKDGNRVVGLDLSSLQLSGSLDPHIGNLTFLHSLQLQNNLLTGLIPHQISNLFRLVLLNMSFNSLEGGFPSNISAMAALEALDLTSNNLTSTLPDELSLLTNLKVLKLAQNHLFGEIPPSFGNLSSLVTINFGTNSLTGPIPTELSRLRNLKDLIITINNLTGTVPPAIYNMSSLVTLALASNKLWGTFPVDIGDTLPNLLVFNFCFNEFTGTIPPSLHNITNIQVIRFAYNFLEGTVPPGLDNLHNLTMYNIGYNKLSSGKDGISFITSLTKSSRLSFLAIDGNNFEGQIPESIGNLSKSLSILFMGGNRLSGNIPPTVGNLNGLALLNLSYNSLSGEIPSEIGQLENLQSLVLAKNQFSGSIPSSLGNLQKLTNLDLSGNELISGIPTSFNNFQKLLSMDLSNNKLNGSIPKEALDLPAIIRLNMSNNLLTGPLPEEIGYLANLLQIDLSSNLISGEIPSSIKGWRSMERLFMARNKLSGPIPNNLGQLRAIEIIDLSSNLLSGPIPDNLQYLLALQYLNLSFNELEGEVPRGGIFKSRANVSLQGNSKLCLYSSCTKSDSKHGKAVKVIILSAVFSTLALCFIIGTLIHFLRMKSKTAPFTELLEDQHEMVSYDELRLATENFNEKNLIGKGSFGSVYKGNLKQDIPVAIKVLDVNRTGSMRSFKAECEALKNVRHRNLVKFITSCSSMDFSNMEFRALVYEHLSNGSLDEWVHGQSSREPGIGLNILERVNIAIDVASAINYLHHDCELPIVHCDLKPSNILLDADMTAKVGDFGLARLLMENANTQSSLTSTHVLTGSIGYLPPEYGFGMKATTAGDVYSFGVTLLELFTGKSPTDECFTGELNLIKWVESCYPEDIMEVIDHKLPELFVDLEYKGRTISSDMQKDCLIKVIGVALSCTVNTPVNRIDMEDVVSKLRRAKDNLLRPPKKSAVF 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27264300 27267451 - ClG42_08g0179000.10 Clacu08g1790 256132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1790 1012 Pfam Leucine rich repeat 447 506 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1790 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 232 340 - -
Clacu08g1790 1012 CDD STKc_IRAK 706 995 - -
Clacu08g1790 1012 Gene3D Ribonuclease Inhibitor 192 337 IPR032675 -
Clacu08g1790 1012 PANTHER OS04G0122200 PROTEIN 44 996 IPR051809 -
Clacu08g1790 1012 SMART serkin_6 700 1003 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1790 1012 SMART LRR_typ_2 397 421 IPR003591 -
Clacu08g1790 1012 SMART LRR_typ_2 589 614 IPR003591 -
Clacu08g1790 1012 SMART LRR_typ_2 150 173 IPR003591 -
Clacu08g1790 1012 SMART LRR_typ_2 445 468 IPR003591 -
Clacu08g1790 1012 SMART LRR_typ_2 469 493 IPR003591 -
Clacu08g1790 1012 SMART LRR_typ_2 174 197 IPR003591 -
Clacu08g1790 1012 SMART LRR_typ_2 517 540 IPR003591 -
Clacu08g1790 1012 SMART LRR_typ_2 102 125 IPR003591 -
Clacu08g1790 1012 Gene3D Phosphorylase Kinase; domain 1 671 780 - -
Clacu08g1790 1012 SUPERFAMILY Protein kinase-like (PK-like) 681 995 IPR011009 -
Clacu08g1790 1012 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 780 - -
Clacu08g1790 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 781 1008 - -
Clacu08g1790 1012 Pfam Leucine Rich Repeat 423 445 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 568 589 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 375 397 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 153 172 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 402 421 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 351 372 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Leucine Rich Repeat 519 540 IPR001611 GO:0005515(InterPro)
Clacu08g1790 1012 Pfam Protein tyrosine and serine/threonine kinase 703 939 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1790 1012 ProSiteProfiles Protein kinase domain profile. 700 1003 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1790 1012 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Clacu08g1790 1012 Gene3D Ribonuclease Inhibitor 338 637 IPR032675 -
Clacu08g1790 1012 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524(InterPro)
Clacu08g1790 1012 SUPERFAMILY L domain-like 34 333 - -
Clacu08g1790 1012 SUPERFAMILY RNI-like 233 605 - -
Clacu08g1790 1012 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Clacu08g1790 1012 FunFam Inactive leucine-rich repeat receptor-like protein kinase 343 636 - -
Clacu08g1790 1012 Gene3D Transferase(Phosphotransferase) domain 1 781 1006 - -
Clacu08g1790 1012 FunFam Leucine-rich repeat receptor-like protein kinase 33 193 - -
Clacu08g1790 1012 ProSiteProfiles Leucine-rich repeat profile. 152 174 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1786 Clacu-Chr8:27246070 Clacu08g1790 Clacu-Chr8:27264300 5.90E-129 dispersed
Clacu08g1787 Clacu-Chr8:27252789 Clacu08g1790 Clacu-Chr8:27264300 1.90E-143 dispersed
Clacu08g1788 Clacu-Chr8:27258576 Clacu08g1790 Clacu-Chr8:27264300 1.10E-129 dispersed
Clacu08g1790 Clacu-Chr8:27264300 Clacu10g2104 Clacu-Chr10:34313500 2.30E-80 dispersed
Clacu08g1789 Clacu-Chr8:27260201 Clacu08g1790 Clacu-Chr8:27264300 1.10E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73783 PF07714 PK_Tyr_Ser-Thr 1.30E-39 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1790 - - - 0.0