Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1803 ATGAAAGCAGTCTCCAATCTCACTTCCTCACTTCCTCTTTCGCCCTCACCGTCACCGTCACCGTCACCTTCGCACTACAGGACCACCGCGGTCTTCACTCCTCGTCGACGGATCGCTTCCTCGTTAGCCATCGGCGGCGCTTTCTCGTCGTGTCGTACACATTTGACTCGGTTTCCACAGCATCGATCTTCGTTTTCGCCTCTGCGATGCAATGTGAGAGAGACGGTGCCGGATCAAGAAATGGCGTCCACCAATGAACAAGACCCACGCATAGCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGGATTTTGTTTCAGGATATTACAACTTTGCTTCTTGATACAAAGGCCTTCAAGGACACTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAGGATATCTCTGTCGTCGCTGGAATTGAGGCGAGGGGTTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTTGTTCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACCGATAAAATAGAGATGCATGTAGGAGCTGTTGAAGCTGGGGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGTCTGCAGCAATAAGGCTACTTGAGCGAGTTGGCGTTGATGTGGTCGAGTGTGCATGTGTGATTGAGCTGGACGGACTAAAGGGCCGTGAACAATTGGGAGGCAGACCTCTATTCGTTCTAGTTAATGCAGCAGGATGA 792 49.12 MKAVSNLTSSLPLSPSPSPSPSPSHYRTTAVFTPRRRIASSLAIGGAFSSCRTHLTRFPQHRSSFSPLRCNVRETVPDQEMASTNEQDPRIAKISKAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYRGKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLSAAIRLLERVGVDVVECACVIELDGLKGREQLGGRPLFVLVNAAG 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27336548 27339380 + ClG42_08g0180300.10 Clacu08g1803 256145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1803 263 Hamap Adenine phosphoribosyltransferase [apt]. 94 261 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Clacu08g1803 263 MobiDBLite consensus disorder prediction 1 27 - -
Clacu08g1803 263 SUPERFAMILY PRTase-like 93 254 IPR029057 -
Clacu08g1803 263 FunFam Adenine phosphoribosyltransferase 1 82 261 - -
Clacu08g1803 263 Gene3D - 81 262 IPR029057 -
Clacu08g1803 263 Pfam Phosphoribosyl transferase domain 125 242 IPR000836 -
Clacu08g1803 263 CDD PRTases_typeI 128 258 IPR000836 -
Clacu08g1803 263 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 83 260 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Clacu08g1803 263 NCBIfam adenine phosphoribosyltransferase 95 259 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1803 K00759 - - csv:101208231 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1498 Clacu-Chr8:24929807 Clacu08g1803 Clacu-Chr8:27336548 3.80E-66 dispersed
Clacu08g1803 Clacu-Chr8:27336548 Clacu10g0288 Clacu-Chr10:3742553 1.40E-74 dispersed
Clacu08g1803 Clacu-Chr8:27336548 Clacu01g0394 Clacu-Chr1:4009305 7.40E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Clacu10g0288 . 30 180 PRT Gene Family AT1G80050 74.8 7.0e-61 230.3
Clacu08g1498 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Clacu08g1803 . 110 259 PRT Gene Family AT1G80050 70.7 2.3e-56 215.3
Clacu08g1498 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Clacu01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Clacu08g1803 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Clacu10g0288 . 8 145 PRT Gene Family AT5G11160 71.0 6.2e-52 200.7
Clacu08g1803 . 81 262 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Clacu01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Clacu10g0288 . 1 180 PRT Gene Family AT1G27450 70.0 6.1e-69 257.3
Clacu08g1498 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Clacu11g0529 . 73 557 PRT Gene Family AT2G16570 85.2 5.8e-243 837.0
Clacu11g0529 . 73 557 PRT Gene Family AT4G34740 86.0 1.5e-243 839.0
Clacu11g0529 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Clacu08g1803 . 81 262 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Clacu01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Clacu10g0288 . 1 180 PRT Gene Family AT1G27450 70.0 6.1e-69 257.3
Clacu08g1498 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Clacu01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Clacu10g0288 . 30 180 PRT Gene Family AT1G80050 74.8 7.0e-61 230.3
Clacu08g1498 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Clacu08g1803 . 110 259 PRT Gene Family AT1G80050 70.7 2.3e-56 215.3
Clacu01g0394 . 6 104 PRT Gene Family AT4G22570 82.8 5.1e-44 173.7
Clacu10g0288 . 5 97 PRT Gene Family AT4G22570 84.9 1.7e-42 168.7
Clacu08g1803 . 86 177 PRT Gene Family AT4G22570 82.6 1.0e-39 159.5
Clacu08g1498 . 11 100 PRT Gene Family AT4G22570 78.9 2.1e-37 151.8
Clacu01g0394 . 1 96 PRT Gene Family AT4G12440 84.4 8.3e-41 162.9
Clacu10g0288 . 1 96 PRT Gene Family AT4G12440 82.3 2.7e-39 157.9
Clacu08g1803 . 81 176 PRT Gene Family AT4G12440 79.2 8.6e-38 152.9
Clacu08g1498 . 4 99 PRT Gene Family AT4G12440 78.1 3.3e-37 151.0
Clacu08g1498 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Clacu01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Clacu08g1803 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Clacu10g0288 . 8 145 PRT Gene Family AT5G11160 71.0 6.2e-52 200.7
Clacu08g0868 . 1 186 PRT Gene Family AT1G71750 65.0 1.7e-69 259.2
Clacu09g2180 . 98 550 PRT Gene Family AT1G55810 85.5 2.3e-226 781.6
Clacu05g1337 . 19 482 PRT Gene Family AT1G55810 73.5 1.4e-199 692.6
Clacu09g2180 . 147 555 PRT Gene Family AT3G27440 76.5 1.5e-184 642.5
Clacu05g1337 . 80 482 PRT Gene Family AT3G27440 75.4 8.8e-180 626.7
Clacu05g1337 . 1 482 PRT Gene Family AT3G27190 86.1 9.6e-247 849.4
Clacu09g2180 . 94 549 PRT Gene Family AT3G27190 75.5 6.7e-208 720.3
Clacu04g0832 . 3 288 PRT Gene Family AT3G53900 66.1 5.4e-107 384.4
Clacu09g2180 . 84 550 PRT Gene Family AT4G26510 84.7 6.5e-232 800.0
Clacu05g1337 . 11 482 PRT Gene Family AT4G26510 75.8 7.0e-210 726.9
Clacu05g1337 . 1 482 PRT Gene Family AT5G40870 86.3 9.7e-247 849.4
Clacu09g2180 . 94 552 PRT Gene Family AT5G40870 74.2 1.3e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139