Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1804 ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAAGTATTCCAATGAGCTTCAATTGCCCAACAATGGCGGCAGTAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTACAGAGTAATTGTAAACAGGACATAAGGAGCTGCAGTAGCTGCAGTACTACCGATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTATTTTATGCCAATTGATGAGAGGAATTTTGGGTCTTCGTTTTTTTCTGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCGCCGCCGCCGCTGAAGGGGAAGATTCCAGCATGGAGAGATTCATTGAGAATAATGTACTACTGGGTAGCCACCCGCCGCCGTCGCCGGTCGTAGATTCCAACGGTGCCAGAAACAAACCAATTGTATTGAAGAGGAAAGTCAATGAGGGGGACATTTCTGATAATCAGAAGAAAAAATCTCGGATCTCCTCACACGGGCAGAAGAAGAAGAAAACAGAGGAGAGGAGAGGAGGGGAAAGTGTAGAGGAAGAAGGGAATACAGGTGGAGCATCAGAAGGACAGAGCTCCATTAGTTACAGTTCCGATCAGGAAGAGAATGGTTCCGAGGAGGGAAACGGCGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGATCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGAGAAAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATCGACCTTGGCCTTCACCAGAAGCTCTCTCCATTTCTATCACATTGA 996 45.58 MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAKYSNELQLPNNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTDNSSASVLIPNSSDYFMPIDERNFGSSFFSDVLIEEVDNALAAAAAAEGEDSSMERFIENNVLLGSHPPPSPVVDSNGARNKPIVLKRKVNEGDISDNQKKKSRISSHGQKKKKTEERRGGESVEEEGNTGGASEGQSSISYSSDQEENGSEEGNGGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGIDLGLHQKLSPFLSH 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27353810 27355935 + ClG42_08g0180400.10 Clacu08g1804 256146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1804 331 FunFam Basic helix-loop-helix transcription factor 246 303 - -
Clacu08g1804 331 CDD bHLH_AtIND_like 246 308 - -
Clacu08g1804 331 Gene3D - 247 310 IPR036638 GO:0046983(InterPro)
Clacu08g1804 331 SMART finulus 251 300 IPR011598 GO:0046983(InterPro)
Clacu08g1804 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 314 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu08g1804 331 MobiDBLite consensus disorder prediction 162 257 - -
Clacu08g1804 331 MobiDBLite consensus disorder prediction 206 229 - -
Clacu08g1804 331 Pfam Helix-loop-helix DNA-binding domain 255 295 IPR011598 GO:0046983(InterPro)
Clacu08g1804 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 307 IPR036638 GO:0046983(InterPro)
Clacu08g1804 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983(InterPro)
Clacu08g1804 331 MobiDBLite consensus disorder prediction 162 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1804 Clacu-Chr8:27353810 Clacu10g1039 Clacu-Chr10:22265571 1.70E-37 dispersed
Clacu03g0858 Clacu-Chr3:10227376 Clacu08g1804 Clacu-Chr8:27353810 1.60E-18 transposed
Clacu02g0721 Clacu-Chr2:7480653 Clacu08g1804 Clacu-Chr8:27353810 5.40E-36 wgd
Clacu05g2250 Clacu-Chr5:30921332 Clacu08g1804 Clacu-Chr8:27353810 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48236 PF00010 HLH 9.80E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1804 - - - 0.0