Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1810 ATGAACCGTGGAGGGAGGAGATGGGAGGCGTGGGATGCGATGAGAAGGGGAGGAAACCGCGAGTCTTACTTTATTTTAGGGAATCAAGTGGGGAAGATACTGTTGCAGAAAATAGATAGAGACAGAGAGGAAGATACAGCGTTTTTGCATGAGGGCAAAGATGCTTGGAGAATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTTTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTGTCTGGAGCATCAGATGCATCAGCTGCTGTTTTTGATATTCAACGTGCAACTCACTCCGAGGGTCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATCAATATGCAGTATCCTCAGCCATATGGTATCCCGTTGATACTGGATTGTTTGTCACTGGCTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGAGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGCATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCTCAGCTTGGGAGACGTCCCCCTATTTCAGGATGGACTGCAAATAAGCTCTCAACATCTAAGTCCCTCTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACCTCATAAGAAACTAGCCAATGGAAATGCAACAAAGCCATCAGCCACAGGTAAACTGCCGGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTATGGGACGTTGAATCCGGGTGCAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAATAAACCATTGCAATTAGCCACATCTGAGGATTCAGCCCTTGTATTTGCCCCATGCATGGCGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGAACTGTACACCGGTGGCAATGATAGGCAAATTCTCGTCTGGTCACCATCCCGAAACTCTACCGAACTGTGGACTCGCAGGATTGGGAATCGACTGCAGACAGGGATAACTGGAGCGACTGACTGTCGTCGACAAGGAAGTTTGGTTTCAATGCTGATGCCATCCATCAGACTCTGCTCACCATGTACATAA 1593 45.64 MNRGGRRWEAWDAMRRGGNRESYFILGNQVGKILLQKIDRDREEDTAFLHEGKDAWRMWKDIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHQYAVSSAIWYPVDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVAWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRIPHKKLANGNATKPSATGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSEDSALVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELWTRRIGNRLQTGITGATDCRRQGSLVSMLMPSIRLCSPCT 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27403295 27409978 - ClG42_08g0181000.10 Clacu08g1810 256152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1810 530 ProSitePatterns Trp-Asp (WD) repeats signature. 261 275 IPR019775 -
Clacu08g1810 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 404 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Clacu08g1810 530 PRINTS G protein beta WD-40 repeat signature 174 188 IPR020472 -
Clacu08g1810 530 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Clacu08g1810 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 SUPERFAMILY WD40 repeat-like 96 486 IPR036322 GO:0005515(InterPro)
Clacu08g1810 530 Gene3D - 58 485 IPR015943 GO:0005515(InterPro)
Clacu08g1810 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Clacu08g1810 530 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 58 488 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(InterPro)|GO:0006283(PANTHER)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Clacu08g1810 530 Pfam WD domain, G-beta repeat 155 187 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 Pfam WD domain, G-beta repeat 445 482 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 Pfam WD domain, G-beta repeat 365 395 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 Pfam WD domain, G-beta repeat 237 274 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 399 - -
Clacu08g1810 530 ProSitePatterns Trp-Asp (WD) repeats signature. 382 396 IPR019775 -
Clacu08g1810 530 MobiDBLite consensus disorder prediction 314 351 - -
Clacu08g1810 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 482 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 FunFam Transducin/WD40 repeat-like superfamily protein 59 321 - -
Clacu08g1810 530 SMART WD40_4 142 187 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 SMART WD40_4 357 395 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 SMART WD40_4 89 129 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 SMART WD40_4 443 482 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 SMART WD40_4 234 274 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 FunFam Excision repair cross-complementation group 8 343 485 - -
Clacu08g1810 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 196 IPR001680 GO:0005515(InterPro)
Clacu08g1810 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1810 K10570 - - csv:101209203 865.529
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36