Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1814 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTTGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCGACGAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTGAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTACGAGGAAGCCCGAGCTTTGCTGGGGAGACTTGAATATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAAGGAATAGACATTAGATCTTTGACGCCAAGAATGGTTAAGGCAATCACTGAAAAGATAAGAGAGTATAAGCCTCGTCCTAAAGGTGACAATGCCCTCCCTAGTGGTGTAATGTCCATGCATTCTGTTAGCCTACTACTTGAGGCAATTTTACTCAAGGCAAAATCACTGGAGGAACTTGGCAAATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAATGGAACGCCCGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGAGGGTATCTTGATGAGGCCATAAACGCCTATCGCCGTGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTCATGTATTTGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTCTGTTGCTAATACTCATGAGGAAAGTGGTGATGCAGGAAATAAACTGGGATCCTGAGATTATGAATCATCTGACTTATGCACTTTCTATCACAAGACAATTTGAATTACTCGCTGAGCATGTAGAGCGGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTATGTTACAATGCAGCAGGACAGAATGAAGCAGCTTTGAACCTTCTAATGAAAGTTTGCGGTTCCTCTGAAGTAAAGCACAAGCCCCATTTTCATTCTATTTTGTTGCTTGCAAAATTGTGTTCGGAGGATACAAAATATGCACGTGATGGAATTAAATTTGCTCATAGAATGATCAATATGGACAGTGAACAAGGTAAGCATTTCAATCCTGAAGCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCGATAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCGGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTTTCGGCTGAGAAGCGACTCAAGGACGCTGAAAGCATAGTTGATTTTGCTTTGGATGAAGCTGAGAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTCCTAAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGGATCTTGCTAGCACTAATTCAAGGGCGAGATGAACTTCAGCTTCAGGCTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCAGTGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCCTGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTGGATGTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGCTCGATCGTTACACAAGGAAGCCCTTGTTTCATTCTCTGTCTCTCTTTCGATCGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGTAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTTTCCAAAATGGAAGGTCTGTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCTGCTCCTCTTCAAAGTTTCGTCTAA 2151 42.96 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAITEKIREYKPRPKGDNALPSGVMSMHSVSLLLEAILLKAKSLEELGKYIESAKECRIILDTVESALPNGTPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEAALNLLMKVCGSSEVKHKPHFHSILLLAKLCSEDTKYARDGIKFAHRMINMDSEQGKHFNPEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLDRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLKDAESIVDFALDEAERMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQGRDELQLQAKNFDQSKDLELEAVAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDVHCPRGWHTTGKYFEARSLHKEALVSFSVSLSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPLQSFV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27417977 27420673 + ClG42_08g0181400.10 Clacu08g1814 256156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1814 716 SUPERFAMILY TPR-like 317 545 IPR011990 GO:0005515(InterPro)
Clacu08g1814 716 Gene3D Tetratricopeptide repeat domain 257 541 IPR011990 GO:0005515(InterPro)
Clacu08g1814 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Clacu08g1814 716 Coils Coil 485 505 - -
Clacu08g1814 716 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Clacu08g1814 716 SMART tpr_5 512 545 IPR019734 GO:0005515(InterPro)
Clacu08g1814 716 SMART tpr_5 573 606 IPR019734 GO:0005515(InterPro)
Clacu08g1814 716 SMART tpr_5 677 710 IPR019734 GO:0005515(InterPro)
Clacu08g1814 716 SMART tpr_5 607 640 IPR019734 GO:0005515(InterPro)
Clacu08g1814 716 SUPERFAMILY TPR-like 513 688 IPR011990 GO:0005515(InterPro)
Clacu08g1814 716 Gene3D Tetratricopeptide repeat domain 40 234 IPR011990 GO:0005515(InterPro)
Clacu08g1814 716 Gene3D Tetratricopeptide repeat domain 543 712 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1814 Clacu-Chr8:27417977 Clacu11g1847 Clacu-Chr11:29593598 4.70E-149 dispersed
Clacu08g1814 Clacu-Chr8:27417977 Clacu07g0114 Clacu-Chr7:1596540 7.20E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1814 K21843 - csv:101209448 1331.24