Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1822 ATGAGTAATTTTTCGGGTTCTCGTTGTAATAATAGTGGTGATGAATCGGGGTGGACAATGTATTTTGAGGATTCGATTGAGACGGAGGGGAGATTTCGGGGGGGTGTGGTGGATTACGGCGGCGGAGAGAAGGAGGAAGAAGAAGGGGATTTGTCGATGATTTCGGATGCGTCGTCGGGGCCGAGGAATGGGTATTATGAGGAGAATAATTGTCAGTCAGTGCGGCGGAGTGGGGGGAAATCGGCGGCGGGGAAAAGTAAAAGGAAACAGGAGATGGGGCGGCGGAACCAACATTCTTGCCTTGATGATACTGCAAGCTCCCCTGTTTTTGGGCTTTCCAAGATCAGAGAGACGAATCCATACAGAAATGAAGGTTTGGTGGAGAATGTAAAAGAATTCTCCCAAACCCATTCTCGAAAACAACATGGGAAGAAACAAACAAGCTTTTTTCAGTCTTCCTCAGTCAAAAAATTGGGCAAGAATGTCTCAGGTAAAAAGCTCTCACCCGGCACCACCGCTGTAAGTGGATGCAATTCCAATTCCACTCTCGCTTTCAGTGAAGCCACCCATTCGGAAATGGAGGACGCCTACGCCAGATCTATCACTGAGGTATTGGATTTCTTTGGGGTTGATCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATTCTAAACTTTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTGATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAACGCAGCAGTCGGGGTGATTACGGAAACAAATGCTGAAAAGGCCCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACAGTGATGAGAAATGGTTGCTTTTCAATACTTCCAGCTACTGAGCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTGACTAATCAACTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGTTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACTGCAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGCAGGGCACGAGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACACCGTTGAAAAAGAAGCTCGATGAATTTGGTACCTTCCTGGCCAAGGTTATTGCTGGAATTTGTGCACTAGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGCGCAATACATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCTATTCCTGAAGGACTTCCTGCTGTTGTCACAACGTGTTTGGCTCTTGGCACCAAACGGATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTCTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAACTTTCGGAGTACAATGTCAGCGGTACAACATATGCTCCTGATGGTATTATTTTTGACAGCACGGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACATTTGGCGATGGGGTCTGCCCTCTGCAACGAGTCTACCTTGCAATATAACCCAGACAAGGGAAACTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCTATGCCTTCTGCTCTAAATATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGCAATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATTCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGTATCCTTTGTAATGAAGATGGTTCCACCAGTGTTTTAACTTCTACTATTCGCACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCCTTGAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTAACTGGGGACAATAAGTCAACTGCTGAATCACTCTGTCGCAAGATTGGTGCTTTTGACCACTTGGTAGATCTAACTGGTCATTCTTACACTGCTTCCGAATTTGAAGAGCTACCTGCAATGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCACAAGAGAATGCTCGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGCGATGGCGTCAATGATGCACCTGCCCTGAAGAAAGCCGATATTGGAATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTGGCTGATGACAATTTTGCTTCTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACACTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATCGGAGCCTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCGGACACTGGTCCTAAGCTAAATTACTCTGAGTTGATGAATTTTGATACTTGCTCAACCCGAGAGACAACATACTCTTGCAGTATATTTGAGGATCGGCATCCATCGACTGTGTCTATGACTGTGCTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCATAACCATGATCCTTCACATGCTTATTATGTATGTGCAACCTCTCGCTGTTCTTTTCTCTGTAACGCCATTATCTTGGGCTGAATGGACGATGGTTTTGTATCTTTCATTTCCTGTTATAATTATTGATGAGGTACTGAAGTGCTTTTCACGACGCTCTAGTGGCACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGACATGATTTACTTCCAAAGAAGGAATTGCATGACAACACTCTAAGCTACCGGTCAGTTAATAATATCACATCACAACACAACAATCATGAAGAGAAAGCGGCAAAGATGAATGTGCTGGTTTAA 3675 43.46 MSNFSGSRCNNSGDESGWTMYFEDSIETEGRFRGGVVDYGGGEKEEEEGDLSMISDASSGPRNGYYEENNCQSVRRSGGKSAAGKSKRKQEMGRRNQHSCLDDTASSPVFGLSKIRETNPYRNEGLVENVKEFSQTHSRKQHGKKQTSFFQSSSVKKLGKNVSGKKLSPGTTAVSGCNSNSTLAFSEATHSEMEDAYARSITEVLDFFGVDPSQGLTDDQVLHHSKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLTNQLRVDQAILTGESCSVEKELESTTAANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYNVSGTTYAPDGIIFDSTGVQLEFPAQLPCILHLAMGSALCNESTLQYNPDKGNYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRNRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSTIRTELEARFQSFAGNEMLRCLAIAFKLLPLSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSYTASEFEELPAMQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDTGPKLNYSELMNFDTCSTRETTYSCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVITMILHMLIMYVQPLAVLFSVTPLSWAEWTMVLYLSFPVIIIDEVLKCFSRRSSGTGRLRLPFRFRRHDLLPKKELHDNTLSYRSVNNITSQHNNHEEKAAKMNVLV 1224
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 27462849 27491128 + ClG42_08g0182200.10 Clacu08g1822 256164
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1822 1224 NCBIfam calcium-translocating P-type ATPase, SERCA-type 245 1038 IPR005782 GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro)
Clacu08g1822 1224 Pfam Cation transporting ATPase, C-terminus 967 1166 IPR006068 -
Clacu08g1822 1224 SFLD p-type atpase 518 935 IPR044492 -
Clacu08g1822 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 193 1170 IPR023298 -
Clacu08g1822 1224 CDD P-type_ATPase_SERCA 197 1168 - -
Clacu08g1822 1224 PANTHER CALCIUM-TRANSPORTING ATPASE 200 1173 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Clacu08g1822 1224 MobiDBLite consensus disorder prediction 133 152 - -
Clacu08g1822 1224 FunFam Calcium-transporting ATPase 547 784 - -
Clacu08g1822 1224 SFLD Haloacid Dehalogenase 518 935 - -
Clacu08g1822 1224 Gene3D - 247 1168 - -
Clacu08g1822 1224 Pfam E1-E2 ATPase 314 516 - -
Clacu08g1822 1224 FunFam Sodium/potassium-transporting ATPase subunit alpha 776 922 - -
Clacu08g1822 1224 PRINTS H+-transporting ATPase (proton pump) signature 855 871 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu08g1822 1224 PRINTS H+-transporting ATPase (proton pump) signature 883 899 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu08g1822 1224 PRINTS H+-transporting ATPase (proton pump) signature 914 939 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu08g1822 1224 Gene3D - 547 784 IPR023299 GO:0000166(InterPro)
Clacu08g1822 1224 Pfam Cation transporter/ATPase, N-terminus 197 264 IPR004014 -
Clacu08g1822 1224 PRINTS P-type cation-transporting ATPase superfamily signature 883 902 - -
Clacu08g1822 1224 PRINTS P-type cation-transporting ATPase superfamily signature 365 379 - -
Clacu08g1822 1224 PRINTS P-type cation-transporting ATPase superfamily signature 537 551 - -
Clacu08g1822 1224 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Clacu08g1822 1224 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Clacu08g1822 1224 PRINTS P-type cation-transporting ATPase superfamily signature 906 918 - -
Clacu08g1822 1224 MobiDBLite consensus disorder prediction 84 98 - -
Clacu08g1822 1224 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 879 1171 - -
Clacu08g1822 1224 FunFam Calcium-transporting ATPase, putative 402 533 - -
Clacu08g1822 1224 SUPERFAMILY HAD-like 770 931 IPR036412 -
Clacu08g1822 1224 SMART Cation_ATPase_N_a_2 195 269 IPR004014 -
Clacu08g1822 1224 Gene3D - 214 429 - -
Clacu08g1822 1224 MobiDBLite consensus disorder prediction 1 105 - -
Clacu08g1822 1224 FunFam Calcium-transporting ATPase 304 429 - -
Clacu08g1822 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 544 781 IPR023299 GO:0000166(InterPro)
Clacu08g1822 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 539 545 IPR018303 -
Clacu08g1822 1224 MobiDBLite consensus disorder prediction 56 79 - -
Clacu08g1822 1224 NCBIfam HAD-IC family P-type ATPase 284 559 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu08g1822 1224 NCBIfam HAD-IC family P-type ATPase 853 971 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu08g1822 1224 Pfam Cation transport ATPase (P-type) 607 716 - -
Clacu08g1822 1224 SUPERFAMILY Calcium ATPase, transduction domain A 316 427 IPR008250 -
Clacu08g1822 1224 Gene3D - 534 927 IPR023214 -
Clacu08g1822 1224 MobiDBLite consensus disorder prediction 1 18 - -
Clacu08g1822 1224 Pfam haloacid dehalogenase-like hydrolase 774 897 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1822 Clacu-Chr8:27462849 Clacu09g0737 Clacu-Chr9:6501679 9.70E-86 dispersed
Clacu03g0182 Clacu-Chr3:2005338 Clacu08g1822 Clacu-Chr8:27462849 1.60E-225 transposed
Clacu05g1912 Clacu-Chr5:28332426 Clacu08g1822 Clacu-Chr8:27462849 2.30E-58 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1822 K05853 - csv:101211345 1900.56