Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1825 ATGCCGATGTACCAGCCTGCTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTCGGCTGCGGTGCGCAGATTCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGCGGAGGCGGGGGGATAATCTGCGGCGGCGTTGGCGGTGGCGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCCATAGAGGTTCCATCGGTGTTCATTTGCCCAATCTCGCTGGAACCCATGCAAGATCCAGTGACCCTCTGCTCCGGGCAGACCTACGAGCGTTCCAACATTCTGAAATGGTTCTCTTTAGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCCGTCACACCGAATCGGACTCTTCACCAGTTGATTCACACCTGGTTTTCGCAAAAGTACTTAGCATTGAAGAAAAGATCAGAGGATGTGCAGGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGTCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACTACCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTAGCTCTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGAATCCTTGTGAATTTGGATCTCGATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATTTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAGAACAGAGAACGTTTCAAGTCTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGATACTCAAATGGTGTAACCGCGGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAACAAATCAGGAAGCAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCTAACTTAAACGCCGATTGTTTGGAAGCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCGGAAGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCGGTGTTTAAGCTAGCGCCGGAGGAATGTGCGATGCTGGCGGTGGAGGCTGGATTGGCGGCGAAATTGCTGCTTGTAATCCAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCTGATTCAATGTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1365 47.25 MPMYQPATWREGDPKLVVGCGAQILDLETVVKDGILGGGGGIICGGVGGGGGEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLRTENVSSLSLLVGLLRMVKDQRYSNGVTAGLSLLRTLCSNEQIRKQLVSIGAVAKLGGALSNLNADCLEAALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAMLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSMFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27500570 27501934 + ClG42_08g0182500.10 Clacu08g1825 256167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1825 454 SUPERFAMILY RING/U-box 66 140 - -
Clacu08g1825 454 SUPERFAMILY ARM repeat 158 440 IPR016024 -
Clacu08g1825 454 CDD RING-Ubox_PUB 71 123 IPR045210 -
Clacu08g1825 454 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1825 454 PANTHER WDSAM1 PROTEIN 66 447 IPR045185 GO:0061630(InterPro)
Clacu08g1825 454 Gene3D - 143 452 IPR011989 -
Clacu08g1825 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Clacu08g1825 454 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1825 454 Pfam U-box domain 70 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2866 Clacu-Chr5:35847462 Clacu08g1825 Clacu-Chr8:27500570 7.30E-164 dispersed
Clacu08g0694 Clacu-Chr8:16531723 Clacu08g1825 Clacu-Chr8:27500570 2.50E-06 dispersed
Clacu08g1825 Clacu-Chr8:27500570 Clacu01g1622 Clacu-Chr1:28278215 1.40E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1825 - - - 0.0