Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1825 ATGCCGATGTACCAGCCTGCTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTCGGCTGCGGTGCGCAGATTCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGCGGAGGCGGGGGGATAATCTGCGGCGGCGTTGGCGGTGGCGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCCATAGAGGTTCCATCGGTGTTCATTTGCCCAATCTCGCTGGAACCCATGCAAGATCCAGTGACCCTCTGCTCCGGGCAGACCTACGAGCGTTCCAACATTCTGAAATGGTTCTCTTTAGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCCGTCACACCGAATCGGACTCTTCACCAGTTGATTCACACCTGGTTTTCGCAAAAGTACTTAGCATTGAAGAAAAGATCAGAGGATGTGCAGGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGTCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACTACCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTAGCTCTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGAATCCTTGTGAATTTGGATCTCGATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATTTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAGAACAGAGAACGTTTCAAGTCTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGATACTCAAATGGTGTAACCGCGGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAACAAATCAGGAAGCAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCTAACTTAAACGCCGATTGTTTGGAAGCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCGGAAGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCGGTGTTTAAGCTAGCGCCGGAGGAATGTGCGATGCTGGCGGTGGAGGCTGGATTGGCGGCGAAATTGCTGCTTGTAATCCAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCTGATTCAATGTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1365 47.25 MPMYQPATWREGDPKLVVGCGAQILDLETVVKDGILGGGGGIICGGVGGGGGEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLRTENVSSLSLLVGLLRMVKDQRYSNGVTAGLSLLRTLCSNEQIRKQLVSIGAVAKLGGALSNLNADCLEAALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAMLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSMFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27500570 27501934 + ClG42_08g0182500.10 Clacu08g1825 256167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1825 454 SUPERFAMILY RING/U-box 66 140 - -
Clacu08g1825 454 SUPERFAMILY ARM repeat 158 440 IPR016024 -
Clacu08g1825 454 CDD RING-Ubox_PUB 71 123 IPR045210 -
Clacu08g1825 454 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1825 454 PANTHER WDSAM1 PROTEIN 66 447 IPR045185 GO:0061630(InterPro)
Clacu08g1825 454 Gene3D - 143 452 IPR011989 -
Clacu08g1825 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Clacu08g1825 454 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1825 454 Pfam U-box domain 70 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1825 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2866 Clacu-Chr5:35847462 Clacu08g1825 Clacu-Chr8:27500570 7.30E-164 dispersed
Clacu08g0694 Clacu-Chr8:16531723 Clacu08g1825 Clacu-Chr8:27500570 2.50E-06 dispersed
Clacu08g1825 Clacu-Chr8:27500570 Clacu01g1622 Clacu-Chr1:28278215 1.40E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g622 . . . . . . . . Cmo05g00134 Cmo12g00545 Cma01g01775 Cma09g00301 Car01g01385 Car12g00549 Sed11g0913 Cpe06g00211 Cpe07g00525 Bhi04g00447 Tan02g1715 Cmetu03g2084 . Hepe08g1345 . Lcy13g2147 Cla08g01635 Cam08g2137 Cec08g1725 Cco08g1844 Clacu08g1825 . Cre08g1608 . . . . Lsi04g01467 Csa04g02494 . Cme03g02117 . . . . . . . . Sed01g2733 Cmo01g01834 Cmo09g00300 Cma12g00605 Cma05g00129 Car05g00111 Car09g00253 Cpe11g00111 Cpe02g00230 Bhi09g03207 Tan01g4675 Cmetu07g0012 . Hepe01g1842 Mch11g0376 . . . . . . . . Lsi08g01540 Csa02g01879 Chy07g00203 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1529 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Clacu02g1283 . 335 979 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Clacu08g1877 . 1 780 U-box Gene Family AT1G24330 59.5 3.5e-243 838.2
Clacu11g1569 . 1 755 U-box Gene Family AT1G24330 58.3 2.6e-230 795.4
Clacu08g1877 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Clacu11g1569 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Clacu01g2318 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Clacu07g0205 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Clacu07g0636 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Clacu01g0615 . 1073 1272 U-box Gene Family AT1G71020 55.9 2.9e-54 209.9
Clacu03g0161 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Clacu05g2310 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Clacu02g2083 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Clacu07g0636 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Clacu01g0615 . 859 1462 U-box Gene Family AT1G23030 52.4 8.3e-86 315.1
Clacu03g0161 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Clacu02g2083 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Clacu03g0161 . 24 689 U-box Gene Family AT3G46510 68.2 3.4e-170 595.5
Clacu02g2083 . 3 638 U-box Gene Family AT3G46510 66.3 5.6e-157 551.6
Clacu05g2310 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Clacu02g1019 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Clacu05g2310 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Clacu02g2083 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Clacu03g0161 . 31 650 U-box Gene Family AT3G54850 55.9 1.8e-104 377.1
Clacu02g1019 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Clacu04g0698 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Clacu03g0744 . 1 713 U-box Gene Family AT1G29340 67.9 1.4e-246 849.4
Clacu05g1286 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Clacu04g0556 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Clacu10g1808 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Clacu10g1808 . 1 403 U-box Gene Family AT2G35930 55.6 4.5e-120 428.3
Clacu04g0556 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Clacu05g1171 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Clacu05g1171 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Clacu01g1622 . 1 407 U-box Gene Family AT5G64660 54.2 2.4e-121 432.6
Clacu01g1622 . 1 407 U-box Gene Family AT5G09800 51.3 6.3e-106 381.3
Clacu08g1825 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Clacu05g2866 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Clacu08g1825 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Clacu05g2866 . 1 454 U-box Gene Family AT5G65920 61.3 2.7e-147 518.8
Clacu05g0176 . 1 872 U-box Gene Family AT2G45910 53.0 3.8e-235 811.6
Clacu11g0311 . 4 725 U-box Gene Family AT2G19410 50.1 2.2e-208 722.6
Clacu01g0471 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Clacu06g1777 . 1 478 U-box Gene Family AT5G65200 50.1 2.8e-88 323.2
Clacu09g1914 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Clacu06g1777 . 27 477 U-box Gene Family AT5G40140 51.5 2.0e-59 227.3
Clacu01g1482 . 29 498 U-box Gene Family AT5G40140 52.1 2.7e-56 216.9
Clacu08g1090 . 26 834 U-box Gene Family AT1G76390 61.2 5.1e-269 924.1
Clacu08g1090 . 35 834 U-box Gene Family AT1G20780 61.7 2.1e-278 955.3
Clacu08g1877 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Clacu11g1569 . 1 767 U-box Gene Family AT1G27910 62.4 4.0e-263 904.4
Clacu01g1826 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Clacu05g0243 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Clacu10g1853 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Clacu05g0448 . 1 517 U-box Gene Family AT1G04510 74.2 6.8e-222 766.9
Clacu05g0448 . 1 486 U-box Gene Family AT2G33340 73.4 6.1e-209 723.8
Clacu07g0204 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Clacu10g1529 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Clacu02g1283 . 335 979 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Clacu08g1877 . 1 780 U-box Gene Family AT1G24330 59.5 3.5e-243 838.2
Clacu11g1569 . 1 755 U-box Gene Family AT1G24330 58.3 2.6e-230 795.4
Clacu08g1877 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Clacu11g1569 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Clacu01g2318 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Clacu07g0205 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Clacu07g0636 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Clacu01g0615 . 1073 1272 U-box Gene Family AT1G71020 55.9 2.9e-54 209.9
Clacu03g0161 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Clacu05g2310 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Clacu02g2083 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Clacu07g0636 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Clacu01g0615 . 859 1462 U-box Gene Family AT1G23030 52.4 8.3e-86 315.1
Clacu03g0161 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Clacu02g2083 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Clacu03g0161 . 24 689 U-box Gene Family AT3G46510 68.2 3.4e-170 595.5
Clacu02g2083 . 3 638 U-box Gene Family AT3G46510 66.3 5.6e-157 551.6
Clacu05g2310 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Clacu02g1019 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Clacu05g2310 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Clacu02g2083 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Clacu03g0161 . 31 650 U-box Gene Family AT3G54850 55.9 1.8e-104 377.1
Clacu02g1019 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Clacu04g0698 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Clacu03g0744 . 1 713 U-box Gene Family AT1G29340 67.9 1.4e-246 849.4
Clacu05g1286 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Clacu04g0556 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Clacu10g1808 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Clacu10g1808 . 1 403 U-box Gene Family AT2G35930 55.6 4.5e-120 428.3
Clacu04g0556 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Clacu05g1171 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Clacu05g1171 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Clacu01g1622 . 1 407 U-box Gene Family AT5G64660 54.2 2.4e-121 432.6
Clacu01g1622 . 1 407 U-box Gene Family AT5G09800 51.3 6.3e-106 381.3
Clacu08g1825 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Clacu05g2866 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Clacu08g1825 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Clacu05g2866 . 1 454 U-box Gene Family AT5G65920 61.3 2.7e-147 518.8
Clacu05g0176 . 1 872 U-box Gene Family AT2G45910 53.0 3.8e-235 811.6
Clacu11g0311 . 4 725 U-box Gene Family AT2G19410 50.1 2.2e-208 722.6
Clacu01g0471 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Clacu06g1777 . 1 478 U-box Gene Family AT5G65200 50.1 2.8e-88 323.2
Clacu09g1914 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Clacu06g1777 . 27 477 U-box Gene Family AT5G40140 51.5 2.0e-59 227.3
Clacu01g1482 . 29 498 U-box Gene Family AT5G40140 52.1 2.7e-56 216.9
Clacu08g1090 . 26 834 U-box Gene Family AT1G76390 61.2 5.1e-269 924.1
Clacu08g1090 . 35 834 U-box Gene Family AT1G20780 61.7 2.1e-278 955.3
Clacu08g1877 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Clacu11g1569 . 1 767 U-box Gene Family AT1G27910 62.4 4.0e-263 904.4
Clacu01g1826 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Clacu05g0243 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Clacu10g1853 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Clacu05g0448 . 1 517 U-box Gene Family AT1G04510 74.2 6.8e-222 766.9
Clacu05g0448 . 1 486 U-box Gene Family AT2G33340 73.4 6.1e-209 723.8
Clacu07g0204 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001278 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 2 1 74