Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1837 ATGGCTGGGACAGGATGGCAAGAATATGAGAAGAACCCATATCACCCTACTCGAAACCCCACCGGAATTATCCAAATGGGTCTCGCCGAAAACAAGCTATGTTATGACTTATTGGATGAGTGGATGGAGAACAATCCAGACGCTTTGGGATTGAGAAGAAATGGAGTGTCTGTGTTTAGAGAATTGGCTCTATTTCAAGACTATCATGGCTTGCCTGCTTTTAAAAAGGTGTTGGTTGAATTAATGGAGGAAATACGAGGAAAGAAAGTGAGATTTGATATGAATAAACTGGTCCTCACCGCTGGTGCAACTTCTGCGAATGAGATCCTAATGTTTTGTCTTGCCGAACCTGGTGAAGCTTTCCTTGTTCCCACTCCTTACTATCCTGGGTTTGACAGAGACTTAAAATGGCGTACAGGCGTACGAATAATTCCAATTCAGTGTTCAAGTTCAAACGGTTTCCGAATCACCGCAGCGGCAATGGAAGAAGCGAGGGAACGAGCCCAAAAGCTGAAATTACGAGTCAAAGGGGTTTTAATCACGAACCCATCGAATCCACTGGGAACCACATTGAGCTGCAAGGAGCTGAATTTAGTGGTGAATTTCGCCACAGCCAACGCAATACACATAGTGAGCGACGAGATATATTCGGCCACAGTTTTCTCATCCCCAAATTTCCAAACCATCATGGACCAACGCCTACAAAAATCCCCAATTTGGGAGCGCATCCACGTGGTGTACAGCCTATCCAAGGATCTAGGCTTGCCTGGGTTCCGCGTAGGCATGATTTATTCAAACAACCCCAAAGTAGTGGCTGCAGCTACCAAAATGTCGAGCTTTGGTCTAGTTTCATCTCAGACACAATATTTGGTGTCACAAATGCTAGGAGACCCCAAATTCCGAGAGAATTACATGACGGAAATGAAGATGAGGATCAGGAAGAGGAAAGGAATGTTGGAGTTGGGGCTCCGAAAAGCCGGAATCAGGTGTTTGAAAGGGAATGCGGGTTTGTTTTGTTGGGTGGATATGAGGCATCTTTTAAAATATCCAAGTTTCCAACAGGAAATGGAGTTTTGGAAGAGGATTTTGTGTGAGGTTGGGCTTAATGTCTCGCCCGGTTCGGCTTGTCATTGTTCTGAACCGGGTTGGTTCAGAATGTGCTTTGCTAACATGTCGGAACACACTTTGATGGTGGCGATGTGTCGTCTTAAGGCATTTGTGGAGTCTACCTTATCTCTCAAAGGCCACCAGAAGGGTTTCGAATTCCGACAACGTCTGCTATTAGAATCAGCTGAACGCAACTTTTTACATCCGAAGAAGATGACCGACGACAATGGAAAACCGGATAAGGGTAATCAATGGCAATCGTCAAGACCACCAAACCAAGAGAAAGCGGAGGACATGAAACTCTGGGGAATTCTTCTTTTCGGTCTGATCGGTGCCTCTGCCACCACTCTCGCCGTTGGTCAGCTGCGGAGAACTGTTGATTGGGTATATACTCAGTTGAGCAGGTCACAATCATCATGGGGTGGAGGAAGTGGCCGTTCTTTCCGGTCATCATTTCAGGAGGAAGCATGGAAAAAGTATAATCGTAGGCTGCAAGAGGAGTATGAAGAAGAAATGGAAAGGGTGGAGCGCATAAGGCGCATGCAGAATGTATTCAACAGAGAGAGGAACAAATACAAGAGAGGCTACGAAAGCTGGAGAGAGAATGGCCCTGGTGCATATCATCAACATCACCAGCGAGATGATTGGTATTGGAAGGCTGAGACGTTCTACAGAGAGCAAAGTAACTCTAATAATTATAGGGAAACTCCAAGAGACAGACCAAGTTACTTGTTATCACATCATTATACAGTTTTGGGTCTCAACAGGTGTCGAAAAACACCTTATACCGATGCTGAGATCAAGACGGCATTCCAATCCAAGGCGAAGCAGTTTCATCCAGATCAGAACCAGGATAATAAAGAAGCTGCTGAGGCGAAGTTCAAAGAGGTGATGACATCTTATGAGGCCATAAAGTCAGAAAGAAAGAACAATAGAGCATAA 2049 45.19 MAGTGWQEYEKNPYHPTRNPTGIIQMGLAENKLCYDLLDEWMENNPDALGLRRNGVSVFRELALFQDYHGLPAFKKVLVELMEEIRGKKVRFDMNKLVLTAGATSANEILMFCLAEPGEAFLVPTPYYPGFDRDLKWRTGVRIIPIQCSSSNGFRITAAAMEEARERAQKLKLRVKGVLITNPSNPLGTTLSCKELNLVVNFATANAIHIVSDEIYSATVFSSPNFQTIMDQRLQKSPIWERIHVVYSLSKDLGLPGFRVGMIYSNNPKVVAAATKMSSFGLVSSQTQYLVSQMLGDPKFRENYMTEMKMRIRKRKGMLELGLRKAGIRCLKGNAGLFCWVDMRHLLKYPSFQQEMEFWKRILCEVGLNVSPGSACHCSEPGWFRMCFANMSEHTLMVAMCRLKAFVESTLSLKGHQKGFEFRQRLLLESAERNFLHPKKMTDDNGKPDKGNQWQSSRPPNQEKAEDMKLWGILLFGLIGASATTLAVGQLRRTVDWVYTQLSRSQSSWGGGSGRSFRSSFQEEAWKKYNRRLQEEYEEEMERVERIRRMQNVFNRERNKYKRGYESWRENGPGAYHQHHQRDDWYWKAETFYREQSNSNNYRETPRDRPSYLLSHHYTVLGLNRCRKTPYTDAEIKTAFQSKAKQFHPDQNQDNKEAAEAKFKEVMTSYEAIKSERKNNRA 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27635610 27644563 - ClG42_08g0183700.10 Clacu08g1837 256179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1837 682 Gene3D - 46 297 IPR015421 -
Clacu08g1837 682 MobiDBLite consensus disorder prediction 438 462 - -
Clacu08g1837 682 CDD DnaJ 617 671 IPR001623 -
Clacu08g1837 682 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 441 680 - -
Clacu08g1837 682 ProSiteProfiles dnaJ domain profile. 616 682 IPR001623 -
Clacu08g1837 682 Pfam Aminotransferase class I and II 24 400 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Clacu08g1837 682 Gene3D DnaJ domain 614 682 IPR036869 -
Clacu08g1837 682 PRINTS DnaJ domain signature 658 678 IPR001623 -
Clacu08g1837 682 PRINTS DnaJ domain signature 640 655 IPR001623 -
Clacu08g1837 682 SUPERFAMILY PLP-dependent transferases 5 407 IPR015424 -
Clacu08g1837 682 SMART dnaj_3 615 678 IPR001623 -
Clacu08g1837 682 Pfam DnaJ domain 617 678 IPR001623 -
Clacu08g1837 682 Coils Coil 161 181 - -
Clacu08g1837 682 SUPERFAMILY Chaperone J-domain 612 678 IPR036869 -
Clacu08g1837 682 CDD AAT_like 60 405 - -
Clacu08g1837 682 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 248 261 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Clacu08g1837 682 Gene3D Aspartate Aminotransferase, domain 1 12 402 IPR015422 -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 172 196 - -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 59 75 - -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 96 116 - -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 208 231 - -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 118 139 - -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 274 297 - -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 26 52 - -
Clacu08g1837 682 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 242 266 - -
Clacu08g1837 682 Coils Coil 530 550 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1837 K01762 - - csv:101213522 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1837 Clacu-Chr8:27635610 Clacu10g0847 Clacu-Chr10:16754027 6.40E-164 dispersed
Clacu01g1854 Clacu-Chr1:30677313 Clacu08g1837 Clacu-Chr8:27635610 2.40E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104