Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1841 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCCACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTGTCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 981 46.08 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFCHPNAAAAAAAAFYFDGHFMGDSHYRLGP 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27695882 27701324 - ClG42_08g0184100.10 Clacu08g1841 256183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1841 326 CDD homeodomain 234 286 IPR001356 GO:0003677(InterPro)
Clacu08g1841 326 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu08g1841 326 SMART ELK_2 202 223 IPR005539 GO:0003677(InterPro)
Clacu08g1841 326 SMART ELK_2 114 134 IPR005539 GO:0003677(InterPro)
Clacu08g1841 326 Pfam KNOX2 domain 112 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1841 326 SUPERFAMILY Homeodomain-like 223 294 IPR009057 -
Clacu08g1841 326 SMART HOX_1 224 289 IPR001356 GO:0003677(InterPro)
Clacu08g1841 326 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677(InterPro)
Clacu08g1841 326 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1841 326 Pfam ELK domain 202 223 IPR005539 GO:0003677(InterPro)
Clacu08g1841 326 Gene3D - 219 292 - -
Clacu08g1841 326 MobiDBLite consensus disorder prediction 166 197 - -
Clacu08g1841 326 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677(InterPro)
Clacu08g1841 326 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g1841 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 293 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu08g1841 326 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2747 Clacu-Chr5:34935468 Clacu08g1841 Clacu-Chr8:27695882 2.80E-64 dispersed
Clacu08g1841 Clacu-Chr8:27695882 Clacu08g1940 Clacu-Chr8:28411673 1.30E-53 dispersed
Clacu05g1924 Clacu-Chr5:28447496 Clacu08g1841 Clacu-Chr8:27695882 8.00E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48243 PF03791 KNOX2 2.50E-23 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1841 - - - 0.0