Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu08g1842 | ATGATCACCGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCACGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCGTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCCCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCGCCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGATGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTGCGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAA | 921 | 56.03 | MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTNPAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 27719004 | 27719924 | + | ClG42_08g0184200.10 | Clacu08g1842 | 256184 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu08g1842 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 52 | 237 | IPR045234 | - | |
| Clacu08g1842 | 306 | FunFam | Zinc finger CCCH domain-containing protein 66 | 68 | 136 | - | - | |
| Clacu08g1842 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 110 | 137 | IPR000571 | GO:0046872(InterPro) | |
| Clacu08g1842 | 306 | SMART | c3hfinal6 | 110 | 136 | IPR000571 | GO:0046872(InterPro) | |
| Clacu08g1842 | 306 | SMART | c3hfinal6 | 145 | 168 | IPR000571 | GO:0046872(InterPro) | |
| Clacu08g1842 | 306 | Gene3D | - | 107 | 178 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu08g1842 | Clacu-Chr8:27719004 | Clacu11g0335 | Clacu-Chr11:3007710 | 8.40E-63 | dispersed | |
| Clacu03g1629 | Clacu-Chr3:29942078 | Clacu08g1842 | Clacu-Chr8:27719004 | 4.10E-67 | wgd | |
| Clacu05g1927 | Clacu-Chr5:28503474 | Clacu08g1842 | Clacu-Chr8:27719004 | 1.00E-77 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu08g1842 | - | - | - | 0.0 |