Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1856 ATGTTGAAGCTATTATCCTCATCTCACCGCATTTCCATCTTCATCTTCATCTTCCTCTGCTCTCCGCCGCTGCTTCCTTCCGCCGCTCTTCCCCTCTCCGACTCCGGTCATCAGCTTATCGCTAACGCTACCCTCCAGTCTAATAATGTATCCGTTCCGAGGAATAAGGAGGGCAGTTTTGCTGACATCATTGATCGTGCTTTGGAGAATGAATTCAAGGAGAATGACCAGAATGAAGCAATTGATGCAGGAAGCTTCAACAACAGTGTAGCGGAGCAGCAGGCAGTTCTGGAGACTGTGGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTTTCAGCTTCAAAACGTTTTCAATTTGGACAGTGATAATAGAGCTGAAGACACTCCTACATTGATTGATCGAAAGGATAATGTCTTTATAATATCTAACTTCAAGTCTAAATATCCAGTGCTACAATTAGACTTGAGATTGATCTCTGATTTGGTAATCGTAATTGTCTCTGCAACTTGTGGTGGCATTGCCTTCGCATGTGCTGGACAACCAGTTATAACTGGATACCTTCTAGCAGGATCTATTATTGGACCTGGAGGATTTAACTTCGTCAGTGAAATGGTTCAAGTTGAAACGGTAGCTCAATTTGGTGTAATTTTTCTTCTTTTTGCACTGGGGTTGGAGTTTTCAACAGCTAAGCTTCGAGTTGTTCGTGCAGTTGCTGTTCTTGGTGGCCTGCTCCAAATTTTCCTGTTTATGTGCCTCAGTGGGATCACAGCCTCGTCATGCGGTGGGAGTGCTTCTGAAGGGGTTTTTGTTGGAGCATTTCTATCAATGTCCTCAACAGCGGTGGTGCTGAAGTTTTTGATGGAAAAGAACTCAACTAATGCTCTTCATGGACAAGTCACAATTGGCACCCTTATTCTGCAGGACTGTGCTGTTGGGTTACTGTTTGCTTTGCTTCCAGTACTAGGTGGGAATTCTGGTATTCTTCAAGGAGTAATATCCATGAGTAAAGTGTTGGTGACCTTGGTTACTTTTTTGGTTGCTTTGTCAATTTTATCCCGTACATGTATTCCCTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGACCAATGAACTCTATCAATTAGCCTCTGTGGCGTTCTGCTTGCTCGTAGCATGGTGTAGTGATAAGTTGGGGCTGAGTCTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCGACAACTGATCTTGCTCAACACACACTTGAACAAATAGAGCCTATAAGGAACCTTTTTGCAGCCCTTTTTCTTGCCAGCATTGGAATGCTGATCCACGTTCAGTTTTTGTGGAACCATGTTGATATATTACTAGCAGCTGTTATACTGGTGATAATTGTAAAAACAATTGTAATTAGCACAGTGGTGAAGGGATTTGGGTATAACAACAGGACAGCACTCCTGGTTGGAATGTCTCTGGCTCAGATAGGAGAATTTGCTTTTGTTCTTCTCAGCCGCGCTTCTAATCTTCATCTAGTTGAGGGGAAACTGTATCTATTGCTTATTGGGACCACAGCCCTCAGTCTGGTGACAACTCCTTTTCTTTTCAAGCTGATACCTGCTGTAGTACATTTAGGCGTGCTATTGCGGTGGTTCTCTCCAGATAGTCTCGTCGAGATTGGATTCAAAGGAGATATCATCCGCTCAGACAGTGTAAAGCAGCGAGTTATTGTAAATATTGATTTTTTACCAAGTTCGCATTTAATGTCATCTGATTTCAGCCTTCCATTGCTACTTCAAGACTCTTCATCAGATGGTCATCAGCAAAAGGAAAAAGAAAAAAAGGTCCAAGGCTTAACTGCCATTTACCTTCTTGCTAATAGCAACAACTTTGTTCCTGACGGTTTGCACAAATGTTAA 1914 42.37 MLKLLSSSHRISIFIFIFLCSPPLLPSAALPLSDSGHQLIANATLQSNNVSVPRNKEGSFADIIDRALENEFKENDQNEAIDAGSFNNSVAEQQAVLETVARVKSKKNDTKEEKFQLQNVFNLDSDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAVLGGLLQIFLFMCLSGITASSCGGSASEGVFVGAFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVISMSKVLVTLVTFLVALSILSRTCIPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNRTALLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPFLFKLIPAVVHLGVLLRWFSPDSLVEIGFKGDIIRSDSVKQRVIVNIDFLPSSHLMSSDFSLPLLLQDSSSDGHQQKEKEKKVQGLTAIYLLANSNNFVPDGLHKC 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27852957 27862322 - ClG42_08g0185600.10 Clacu08g1856 256198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1856 637 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 44 569 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Clacu08g1856 637 Pfam Sodium/hydrogen exchanger family 169 535 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Clacu08g1856 637 Gene3D - 159 542 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0891 Clacu-Chr5:7761194 Clacu08g1856 Clacu-Chr8:27852957 2.90E-185 dispersed
Clacu05g0198 Clacu-Chr5:1779180 Clacu08g1856 Clacu-Chr8:27852957 2.90E-37 transposed
Clacu09g1700 Clacu-Chr9:30580018 Clacu08g1856 Clacu-Chr8:27852957 2.40E-29 transposed
Clacu03g1608 Clacu-Chr3:29723371 Clacu08g1856 Clacu-Chr8:27852957 1.50E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1856 K26735 - csv:101217282 1002.28