Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1877 ATGGATATTACTGAGGTTGAAGAAAATCTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAAACTCTCTCTGCAATATATTATAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGTCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAACACTCTCCAACATTGTACAGAGAGTAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAGTTTGAGAAGGTAAAAAATGCTCTACAAGACAGCCTTAAACGTGTTGAAGATATTGTTCCCCAGTCAATTGGATATCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGACGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAGCAATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCGAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGACGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAACTCTCTCGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAGCACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCCAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGAGTTATCTGAATCAGAGTCTCTTAATTTGTCACCTGTGGACTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTCCCACTGGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATGTAGTGGATGACATTGACAACTCTGCTGAAGACCAAGAGTCCAATGTAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCCTAAATGAAGAAGCGGACTTGAAGAAAAAGTCCGCGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCCCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAGGAAATAATGTTGGCAGAACGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTTAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAAACACTATGCAAACTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTTCTTTCAGCCCGTCGGGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTACTCCAGAGCTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAGCCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTATGCAATGGGAATGAGAGGTGCAGCGAGATGGTCCTACAGGAAGGCGTAATTCCCGGTTTGGTGTCGATGTCTGTGAACGGGACAGCAAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGGCGCCGCCACCAGCACCCACACCCACACTAACACCGACACCCATACCGACACCGACCGAACGATCAGAGAGTAGCGGGACATCTATGGCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACATCAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCGGTGTACCAATGCTAA 2349 43.72 MDITEVEENLFAASDAKLHGGMCKTLSAIYYKVLSIFPSLEAARPRSKSGIQSLCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKNALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDSNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQNSLEDSGAGGNGQAFERQLTKIGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLELSESESLNLSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNVVDDIDNSAEDQESNVNMLARYEQYLKVLNEEADLKKKSAVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERVISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQALLSARRDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREAPPPAPTPTLTPTPIPTPTERSESSGTSMAVAESKPLCKSISRRKTSKAFSFLWKSKSYSVYQC 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28027309 28030797 + ClG42_08g0187700.10 Clacu08g1877 256219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1877 782 MobiDBLite consensus disorder prediction 719 733 - -
Clacu08g1877 782 SUPERFAMILY RING/U-box 279 355 - -
Clacu08g1877 782 PANTHER U BOX DOMAIN-CONTAINING 22 715 - -
Clacu08g1877 782 SUPERFAMILY ARM repeat 435 699 IPR016024 -
Clacu08g1877 782 Coils Coil 87 107 - -
Clacu08g1877 782 Pfam U-box domain 280 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1877 782 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1877 782 MobiDBLite consensus disorder prediction 224 247 - -
Clacu08g1877 782 Gene3D - 408 719 IPR011989 -
Clacu08g1877 782 MobiDBLite consensus disorder prediction 715 749 - -
Clacu08g1877 782 CDD RING-Ubox_PUB 280 332 IPR045210 -
Clacu08g1877 782 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Clacu08g1877 782 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1877 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Clacu08g1877 782 Gene3D - 12 105 IPR036537 GO:0007166(InterPro)
Clacu08g1877 782 MobiDBLite consensus disorder prediction 222 250 - -
Clacu08g1877 782 MobiDBLite consensus disorder prediction 734 749 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0861 Clacu-Chr3:10278333 Clacu08g1877 Clacu-Chr8:28027309 4.20E-11 dispersed
Clacu05g1792 Clacu-Chr5:27104679 Clacu08g1877 Clacu-Chr8:28027309 1.10E-24 dispersed
Clacu07g0848 Clacu-Chr7:21425276 Clacu08g1877 Clacu-Chr8:28027309 3.70E-88 dispersed
Clacu08g1877 Clacu-Chr8:28027309 Clacu11g1569 Clacu-Chr11:26829994 7.40E-281 dispersed
Clacu08g1877 Clacu-Chr8:28027309 Clacu03g0744 Clacu-Chr3:8247712 9.00E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1877 - - - 0.0