Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1888 ATGTCCCCCTCCACTTTACTAATTGGTATGATGATCCGGGTGCAAACTAAGATGTTGAAGCTAAGGCTAAGACTTTTTACGGACCTGCGGAAGAAAGGACCGAGTCTGAACTTAAGAGTCAGAAATGAAAATTTGAAGGTGGTGGGCTCGTCGTTCCTTCGTACTCCGCACGCTCGCTCTCCCAAGTCCCATCTTTCTCGAAATTTCACGGAATTCCCCGAATCAGAGACTATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCACAGCCACAGCAGACTCATCAGCAGCACCAAATGATGCTTGGTGACAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCCAAGAAGCGAGCGGAGACTTGGGTTCAGGATGAGACTCGAAGCTTAATTGCCCTACGCCGGGAGATGGATGGCTTGTTTAATACTTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGATTTGATCGCTCCCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAAGCAAAGCACCATGACAGGGGAAGTGGCTCTGCTAAGATGTCGTGTTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGTCCCACGCCACCCAAGATTGATTCATATATGCAATTCTCAGACAAAGGAATAGAGGATAATGGTCTATCGTTCGGACCTGTTGAAGCAGGTGGCAGACCTTCACTCAATCTTGAAAGACAACTAGATCATGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGGGAGGCATCAGGAAATGGTGGGGAGAGTCAAGCATTTGGCGGGAGAGTAATATCAGTGAAGTGGGGGGACTACACAAGAAGAATTGGTGTTGATGGCACCTCAGAGGCAATCAAGGAGGCAATCAAGTCTGCATTCAGATTGAGAACCAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGTGTGGCTGTTAAAATCTGCCTATATGATGAATCTGACCACTTACCGGTACATACTGAAGACAAAGTTTTTTACATTGAAGAAGATTACCGAGATTTTTTAGCTCGTCGAGGCTGGACATGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGACCTCCGTCCTGGTGCAATATACCGTGGTTATATTCCCTCTGTATATATCAATATGGATTGTTGGCAATATCGTCTCATCTGTACAATGAGTAGTGCTTCATCTGTTTTTTTTCGAGCCATAACAGAAGAAGCATATAATTTGGAAGGACTCGACTTATACATCGCCAACAAATTCAGCAGGCAATCAACAACTAAATTCAAAGGTCAGTAA 1554 45.56 MSPSTLLIGMMIRVQTKMLKLRLRLFTDLRKKGPSLNLRVRNENLKVVGSSFLRTPHARSPKSHLSRNFTEFPESETMYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREASGNGGESQAFGGRVISVKWGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGVAVKICLYDESDHLPVHTEDKVFYIEEDYRDFLARRGWTCLREFDGYRNIDNMDDLRPGAIYRGYIPSVYINMDCWQYRLICTMSSASSVFFRAITEEAYNLEGLDLYIANKFSRQSTTKFKGQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28127757 28132905 - ClG42_08g0188800.10 Clacu08g1888 256230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1888 517 CDD GT1 148 213 - -
Clacu08g1888 517 MobiDBLite consensus disorder prediction 109 131 - -
Clacu08g1888 517 Gene3D - 150 212 - -
Clacu08g1888 517 FunFam trihelix transcription factor GT-1 150 212 - -
Clacu08g1888 517 SMART sant 146 208 IPR001005 -
Clacu08g1888 517 MobiDBLite consensus disorder prediction 132 148 - -
Clacu08g1888 517 Pfam Myb/SANT-like DNA-binding domain 149 233 IPR044822 -
Clacu08g1888 517 PANTHER FI21293P1 113 453 - -
Clacu08g1888 517 ProSiteProfiles Myb-like domain profile. 142 206 IPR001005 -
Clacu08g1888 517 MobiDBLite consensus disorder prediction 108 148 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48249 PF13837 Myb_DNA-bind_4 3.20E-20 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1888 - - - 0.0