Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1900 ATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGTGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTTGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGATCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1755 41.54 MENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDLCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28194833 28197618 - ClG42_08g0190000.10 Clacu08g1900 256242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1900 584 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Clacu08g1900 584 SUPERFAMILY CheY-like 16 141 IPR011006 -
Clacu08g1900 584 PIRSF RR_ARR_type-B 1 520 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Clacu08g1900 584 FunFam Two-component response regulator 17 172 - -
Clacu08g1900 584 Gene3D - 194 257 - -
Clacu08g1900 584 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Clacu08g1900 584 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Clacu08g1900 584 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Clacu08g1900 584 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Clacu08g1900 584 FunFam Two-component response regulator 194 257 - -
Clacu08g1900 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 318 IPR045279 GO:0009736(InterPro)
Clacu08g1900 584 CDD REC_typeB_ARR-like 19 133 - -
Clacu08g1900 584 Gene3D - 17 171 - -
Clacu08g1900 584 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1900 Clacu-Chr8:28194833 Clacu11g0484 Clacu-Chr11:4586300 8.50E-64 dispersed
Clacu08g1900 Clacu-Chr8:28194833 Clacu05g0738 Clacu-Chr5:6207635 9.90E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48250 PF00072 Response_reg 1.20E-24 CL0304 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1900 K14491 - csv:101204370 1117.06