Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1905 ATGGCTTCCATATCACCTTACCGCCCAAACTTTGTGTTCTCTTCATTTCCGACCCGTGTTCCGAACTCAAACCCTCTATTTCATGGAGTTCGATTCCGAGGTTTATCCCACCATAAGCCTTTCCTTCGCGGTTCCCTTGCTGTGGCGAGATTTGGGTTTAAACCCGAGTTCTTGCCTGACCCGGATAACGCCGAGGGCTTTGTTAGAGAGTTCTTTGGCAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGAGAATGTTACCACCGCCAAGCAGACTGACGATTGGTTTACGGGGATTACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCTATTATACTCCTTACAGTTCTTGTTAAGGCTGCTACGTTTCCTTTAACAAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCACAAGTGAAGGCTGTTCAACAACGCTATGCTGGGGATCAGGAGAGGATTCAACTTGAGACTGCTAGACTGTACAAATTAGCTGGCATAAACCCATTGGCAGGATGCCTACCCACGTTGGCAACAATTCCTGTATGGATTGGACTATACAGGGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACGGAAGGTTTTTTCTGGATACCCTCTCTAGCTGGTCCAACTACGATTGCCTCCCGACAAAATGGGAGTGGTATTTCTTGGCTCTTTCCATTTGTTGATGGTCACCCACCACTTGGGTGGTCAGATACCTTTGCGTATCTTGTCTTGCCTGTGTTGCTGGTCGTTTCGCAGTACATCTCTGTTCAAATTATGCAATCATCGCAGACTAATGATCCAAGCATGAAGAGTTCTCAAGCGATAACGAAGTTCCTACCATTAATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACTAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTAGGTGGTGCCAAAACCCCCGACAAACAGTTCATTGATGAAATCATCAAACAAGAACAAGAACTAGCCCGTGTCCAGAGCGAAGCGCCCAAGTTAAACTCAATCTCAAGTAGCACAGTAGCCCGACAAGAAGAGAAGCTGACAGCAGAAGGGCTAAAGCCTGGTGAAAGATTTAAACAGTTGAAGGAGCAAGAGGCTAGGTTAAGACAGCTAGAAGAAGAAAAAAGGAAAGCTGAAAAGGTAGCCAAGGTTGAATCTCTGACAATAAATGACAGTGACAAGAGTGCAACTGTTGGAGTTGTTGTCAATGGCAGTCTTTCTAGGCAGGATGTAAAGGAGGATCGGAACTCCATTCCCACGACTTCTAGACAAAGAACTGATGTGGACAACGAGCCAAGTGCAACTCAAGGAGAGGGAGTACTCGAGACATACACCAGGGTGGCCAAGGATGCCAAACTAAACGGAGAAGAACAAAGAGAGTAA 1518 45.92 MASISPYRPNFVFSSFPTRVPNSNPLFHGVRFRGLSHHKPFLRGSLAVARFGFKPEFLPDPDNAEGFVREFFGKAESVLYTIADAAVSASPENVTTAKQTDDWFTGITNYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQTNDPSMKSSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKTPDKQFIDEIIKQEQELARVQSEAPKLNSISSSTVARQEEKLTAEGLKPGERFKQLKEQEARLRQLEEEKRKAEKVAKVESLTINDSDKSATVGVVVNGSLSRQDVKEDRNSIPTTSRQRTDVDNEPSATQGEGVLETYTRVAKDAKLNGEEQRE 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28229773 28234221 + ClG42_08g0190500.10 Clacu08g1905 256247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1905 505 MobiDBLite consensus disorder prediction 453 490 - -
Clacu08g1905 505 CDD 5TM_YidC_Alb3 132 345 IPR047196 -
Clacu08g1905 505 MobiDBLite consensus disorder prediction 379 399 - -
Clacu08g1905 505 Coils Coil 403 433 - -
Clacu08g1905 505 Pfam 60Kd inner membrane protein 131 345 IPR028055 -
Clacu08g1905 505 NCBIfam membrane protein insertase YidC 131 345 IPR028055 -
Clacu08g1905 505 PANTHER OXA1 48 392 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(PANTHER)|GO:0032977(InterPro)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Clacu08g1905 505 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0166 Clacu-Chr3:1793362 Clacu08g1905 Clacu-Chr8:28229773 2.50E-120 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1905 K03217 - csv:101205346 905.205