Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1907 ATGTGGTCTGTTTCATCTTCTCCAGTAGCCGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTGTCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTACAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAAAGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG 1170 47.86 MWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28244138 28246252 + ClG42_08g0190700.10 Clacu08g1907 256249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Clacu08g1907 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Clacu08g1907 389 PANTHER PECTATE LYASE 18-RELATED 26 386 IPR045032 GO:0030570(InterPro)
Clacu08g1907 389 Pfam Pectate lyase 127 304 IPR002022 -
Clacu08g1907 389 SUPERFAMILY Pectin lyase-like 21 383 IPR011050 -
Clacu08g1907 389 FunFam Pectate lyase 40 382 - -
Clacu08g1907 389 Gene3D - 40 382 IPR012334 -
Clacu08g1907 389 SMART amb_all 115 312 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0334 Clacu-Chr3:3829960 Clacu08g1907 Clacu-Chr8:28244138 7.80E-189 dispersed
Clacu05g2657 Clacu-Chr5:34212655 Clacu08g1907 Clacu-Chr8:28244138 4.10E-132 dispersed
Clacu07g0161 Clacu-Chr7:2073726 Clacu08g1907 Clacu-Chr8:28244138 5.90E-171 dispersed
Clacu08g1907 Clacu-Chr8:28244138 Clacu09g1989 Clacu-Chr9:34755578 2.20E-185 dispersed
Clacu08g1907 Clacu-Chr8:28244138 Clacu05g0400 Clacu-Chr5:3446645 5.60E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1907 K01728 - csv:101208076 724.161