Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1938 ATGAGGACTGGATCACCACTTGGATTGTTCATTTTCATCACCGCTCTTCTCTTACTTCAATTATCCACAGTGGCAGACCCCAGATCCCGGACCGTCAAGATACTATGTTCAACCGTGCTAGAGCACAATACAACCGCCTTTGTGCCCAATTTCGTGGCCACGATGCAAATAATCAGCGACCAAATGCGAACCGGTGGGTTTGGAGTCGCAGTTGTGGGTAAAGGCCCGGACGCCAACTACGGCCTTGCTCAATGTTACGGAGATTTGTCGCTGATGGACTGTGTGTTGTGTTATGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTTCAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGACGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCACCAACTCCCTTTTTGAACAGTCGGCCAGGCAGGCTGTGGCCCGAGCAACCCAAACTGCACCCAACAATGGAGGGTTTGCCAGAATTCAAGTGGCTCCCCCTGGAACCCCCAATGCCTCCGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCACCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCCGAAGCAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAACCTTGACTTCTTAAATGCCGAAGCTTCAGCTTCAAGGTCAAGGGGTACTATTATAGAAATTGTAGTCTCCCTGGTGAGTTCTGTTGCTGTTTTAGTCGTTGGAGTGTTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGAAGAAGCGAAGAGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAATACTCTACCCTTGAAAAGGCAACAGGATCTTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGCAATTCTGTCGGACGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAACAACAAACATAGAGCAGCAGACTTTTACAATGAAGTAAACATAATCAGTAGTGTGGAGCACAAAAACTTAGTACGGTTGCTCGGTTGTAGTTGTTCTGGACCTGAAAGTTTACTCGTCTATGAATACCTTGCCAACAAGAGTCTCGACCGCTTCATTTTCGATCGAGATAGAGGTAAATCGCTCAATTGGGAGAAGAGATTTGATATCATTGTGGGAACAGTTGAAGGTTTGGCTTACCTTCATGAGAACTCAAAAACCAAGATCATACACAGAGACATCAAGGCTAGTAACATCCTGCTAGACTCCAAGCTTCGAGCTAAAATAGCTGATTTTGGATTAGCTAGATCCTTTGAAGAAGATGAGAGTCACATCAGCACGGCCATTGCTGGAACCTTGGGATACATGGCGCCAGAGTATTTAGCTCATGGGCAGCTAACAGAAAAGGCAGATGTGTACAGTTTTGGTGTGGTTTTGCTGGAGACCGTGACCGGCATACAAAACAGTAGAAGCAAAACCTCTGACTACTTGGAAAGCATAGTACTAATTGCATGGAAGCACTTTCAATCGGGGACAGTGGAAAGGATACTGGATCCGAACCTTATGGTTGAGGAAGATGGGAGCATAAAAGAGGAGATATTGAGAGTGGTGCAGATAGGGCTTCTTTGCACACAGGAGACTGCATCTCTGCGACCCACAATGTCCAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGGAACTTCCGGCGCCGACCAACCCACCGTTCATGGACGAGAGGACAATGGAATTAAACGACACCAGTGGCACTGAGGATCCATCATGCTTCAACCTCACGAAAGCTTCTTCCTCAGCGGCCACCGTGACCCATAGTTCATTTCATCCCAGAACCCCGGATTCCATGGCGATCCAGCTTGTTTATGCTTCCAAATATGTCCTATTTTCAATCATCACTATTCTTCTGCTGCTCCCAACTTCGACTCTGGGGAAGCCAAGAGATCAAACTGTGAGAGTCATCTGCGGGAAAGAACTGGAGCACAACACCACCGCCTACGTCCCAAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAAATCGAAACTTCAGGATTTGGAACCGCCGGTACAGGAATAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTCTCACCCCTTGAATGTGTGCTGTGTCATTCTCAAGCACGTACAATGCTCCCCCAATGCTTCCCTTTCAATGGCGGCCGAGCTTTCATTGATGGCTGCTTCCTGAGGTTCGAAAACTATACCTTTTTCGACGAATACAAAGGACCTGAAGACACTGCAGTTTGTGGGAACTTCACCCAAAATGACCCCAACTATAGACAAGCAGTCAAGGAGGCAGTGATGCAAGTGGTTAACGGTGCACCAGACAACAGAGGCTTTGCAAAAGCTCGAATGGCTGTGGCTGGGATGGCAAATGAGTCCGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGTTCATGTTTGTTAATTGCTTCTGCTTCAATGTTGCGATGTTTACCTCAATCTGAAGGACGAGCACTGAACACAGGCTGCTTCATGAGATATTCAAATACAGACTTCCTCAACAAGGACATCAAAAATAGTTCCAGAGGTGGCACAAGAACTGAATTGATAGTTTCAGTTTTGAGTTCTGTTGTTGTTTTGATAGTTGGCCTGGCGATTGGAGCTTATATCTGGAAGCGCAGACATATACAAAAGAAAAGGAAAGGAGGTTCAACTGATGTGAAGAAGTTTGCAAAAACTCTTCAAGATAGTAACTTGGAATTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTTGATAACAAGATTGGACAGGGCGGGTTTGGCTCTGTTTATAAGGGAACTCTATCCGATGGAAGAGAAATTGCTGTGAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATGATCAGCATTGTCGAACATAAAAATCTGGTAAGATTACTTGGATGCAGTTGTTCTGGACCTGAAAGCCTTCTTGTTTATGAATTCCTACCAAACAAGAGTCTCGATCGCTTCATTTTCGATACCAGTAGCAGTAAAGCTCTTGATTGGGATAAGAGATACAACATCATCACTGGAACGGTTGAAGGTTTAATATATCTACACGAAAATCCAAAGATCAAAATCATACACAGGGATATAAAGGCGAGTAATATCTTGCTGGATCTAAAGCTTCAAGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAAAGCAAGAGCCATATTAGCACGGCTGTTGCAGGAACCCTAGGATATATGGCTCCGGAGTATCTAGCTTATGGCCAGTTATCAGAAAAGGCCGACGTCTACAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGATTACAATATAGTGGCATTCAAGTCTCCGGCAACATTGAAAGTCTGATCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGATTATTTGATCCAAATCTCAATCTTCAGAATCACTATAACAAGAAAGTGAAGGATGAGGTAAAGAGAGTGGTGCACATAGGGCTCTTATGCATCCAGGAGATTCCATCTCTACGACCAACAATGTCGAAGGTTCTACGAATGCTGACCATGGAGGAAGAGCATCTTCCTCCACCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTTGATGATTCATGCAAGTACTCACGATGTTATTCTAATACGGAGGGATCTTCTTCTACTGCCACAGTCGGCCATAGTTCTTTCCATCCCAGATAA 3921 45.14 MRTGSPLGLFIFITALLLLQLSTVADPRSRTVKILCSTVLEHNTTAFVPNFVATMQIISDQMRTGGFGVAVVGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYDEFSGPLDRAVCGNNSITNSLFEQSARQAVARATQTAPNNGGFARIQVAPPGTPNASVYLLAQCWRNLNRTSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNLDFLNAEASASRSRGTIIEIVVSLVSSVAVLVVGVLIGIYIWNNRYVKKKRRGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKAILSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKSLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIAWKHFQSGTVERILDPNLMVEEDGSIKEEILRVVQIGLLCTQETASLRPTMSKVLQMLMKKEEELPAPTNPPFMDERTMELNDTSGTEDPSCFNLTKASSSAATVTHSSFHPRTPDSMAIQLVYASKYVLFSIITILLLLPTSTLGKPRDQTVRVICGKELEHNTTAYVPNFFGSMEKVRQQIETSGFGTAGTGIGPDASYGLAQCHGDLSPLECVLCHSQARTMLPQCFPFNGGRAFIDGCFLRFENYTFFDEYKGPEDTAVCGNFTQNDPNYRQAVKEAVMQVVNGAPDNRGFAKARMAVAGMANESAAYALGQCWRSLNRSSCSSCLLIASASMLRCLPQSEGRALNTGCFMRYSNTDFLNKDIKNSSRGGTRTELIVSVLSSVVVLIVGLAIGAYIWKRRHIQKKRKGGSTDVKKFAKTLQDSNLEFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLSDGREIAVKRFFFDNRHRAADFYNEVNMISIVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTSSSKALDWDKRYNIITGTVEGLIYLHENPKIKIIHRDIKASNILLDLKLQAKIADFGLARSFQESKSHISTAVAGTLGYMAPEYLAYGQLSEKADVYSFGVLLLEIVTGLQYSGIQVSGNIESLITAMWRHFQAGTVERLFDPNLNLQNHYNKKVKDEVKRVVHIGLLCIQEIPSLRPTMSKVLRMLTMEEEHLPPPTKPPFMDEMTMELDDSCKYSRCYSNTEGSSSTATVGHSSFHPR 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28402653 28408708 + ClG42_08g0193800.10 Clacu08g1938 256280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1938 1306 ProSiteProfiles Gnk2-homologous domain profile. 790 897 IPR002902 -
Clacu08g1938 1306 FunFam Putative DUF26-domain receptor-like protein kinase family protein 289 395 - -
Clacu08g1938 1306 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Clacu08g1938 1306 ProSiteProfiles Gnk2-homologous domain profile. 135 240 IPR002902 -
Clacu08g1938 1306 FunFam Cysteine-rich receptor-like protein kinase 2 29 130 - -
Clacu08g1938 1306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1099 1111 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1938 1306 CDD STKc_IRAK 326 595 - -
Clacu08g1938 1306 FunFam Cysteine-rich receptor-like protein kinase 3 795 897 - -
Clacu08g1938 1306 CDD STKc_IRAK 984 1254 - -
Clacu08g1938 1306 FunFam Putative DUF26-domain receptor-like protein kinase family protein 948 1053 - -
Clacu08g1938 1306 SUPERFAMILY Protein kinase-like (PK-like) 962 1279 IPR011009 -
Clacu08g1938 1306 Pfam Protein kinase domain 979 1251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1938 1306 Pfam Protein kinase domain 322 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1938 1306 Gene3D Transferase(Phosphotransferase) domain 1 1054 1261 - -
Clacu08g1938 1306 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Clacu08g1938 1306 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 165 624 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Clacu08g1938 1306 Pfam Salt stress response/antifungal 799 894 IPR002902 -
Clacu08g1938 1306 Pfam Salt stress response/antifungal 143 237 IPR002902 -
Clacu08g1938 1306 Pfam Salt stress response/antifungal 699 784 IPR002902 -
Clacu08g1938 1306 Pfam Salt stress response/antifungal 43 128 IPR002902 -
Clacu08g1938 1306 ProSiteProfiles Gnk2-homologous domain profile. 685 786 IPR002902 -
Clacu08g1938 1306 ProSitePatterns Protein kinases ATP-binding region signature. 984 1006 IPR017441 GO:0005524(InterPro)
Clacu08g1938 1306 FunFam Cysteine-rich receptor-like protein kinase 2 685 786 - -
Clacu08g1938 1306 FunFam Cysteine-rich receptor-like protein kinase 2 396 601 - -
Clacu08g1938 1306 Gene3D Phosphorylase Kinase; domain 1 280 395 - -
Clacu08g1938 1306 Gene3D Phosphorylase Kinase; domain 1 938 1053 - -
Clacu08g1938 1306 Gene3D - 29 130 IPR038408 -
Clacu08g1938 1306 Gene3D - 686 786 IPR038408 -
Clacu08g1938 1306 Gene3D - 796 897 IPR038408 -
Clacu08g1938 1306 Gene3D - 139 240 IPR038408 -
Clacu08g1938 1306 FunFam Cysteine-rich receptor-like protein kinase 2 1054 1261 - -
Clacu08g1938 1306 SMART serkin_6 978 1255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1938 1306 SMART serkin_6 320 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1938 1306 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524(InterPro)
Clacu08g1938 1306 ProSiteProfiles Protein kinase domain profile. 978 1269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1938 1306 FunFam Cysteine-rich receptor-like protein kinase 3 139 240 - -
Clacu08g1938 1306 ProSiteProfiles Protein kinase domain profile. 320 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1938 1306 SUPERFAMILY Protein kinase-like (PK-like) 305 614 IPR011009 -
Clacu08g1938 1306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1938 Clacu-Chr8:28402653 Clacu10g1389 Clacu-Chr10:27010902 3.30E-132 dispersed
Clacu05g1120 Clacu-Chr5:10224599 Clacu08g1938 Clacu-Chr8:28402653 6.30E-69 transposed
Clacu06g0231 Clacu-Chr6:2673740 Clacu08g1938 Clacu-Chr8:28402653 1.80E-24 transposed
Clacu05g2748 Clacu-Chr5:34942248 Clacu08g1938 Clacu-Chr8:28402653 5.70E-130 wgd
Clacu06g1822 Clacu-Chr6:28774407 Clacu08g1938 Clacu-Chr8:28402653 6.50E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73786 PF00069 Pkinase 2.30E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1938 - - - 0.0