Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1940 ATGACTTTGGTTTCCACTACTTCCGCCATATCCCAACCCCAACCACCTTCCACTACTCCAGATTTCCCACTCCCAGAAGATGCTCTCACCCTCACCAAGGCCAAAATTCTCTCTCATCCTACCTATCCTCGTTTGCTTCAAGCTTATATTGACTGCCAGAAGGTTGGAGCTCCTCCGGAGATAGCTTGCTTGTTGGAGGAAATCCGGCGAGAAAACGACAGTCACAAACAAAACGCCATCTCCACGTGCTTTGGAGCCGATCCCGAGCTCGATGAGTTCATGGAAGCGTACTGTGACATGCTGGTGAAGTATAAATCAGATCTCTCGAGGCCCTTTCATGAAGCTTCTTCCTTCTTGAACAGCATTCAACTGCAACTTAGCGACCTCTGCGCTGGTGCTTCCACCAGAACCCCTTCCAATGAGGATGCTATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATGAGGGTGGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCGAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGTTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATATGCAAATATGGATAATGTGGCTGATCAATTTTACGCTAGGCTTGACTCTTGTGAATGA 828 45.41 MTLVSTTSAISQPQPPSTTPDFPLPEDALTLTKAKILSHPTYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDSHKQNAISTCFGADPELDEFMEAYCDMLVKYKSDLSRPFHEASSFLNSIQLQLSDLCAGASTRTPSNEDAMSSDDELNWGERELQDAQMRVEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLFEWWNVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQYANMDNVADQFYARLDSCE 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28411673 28424957 - ClG42_08g0194000.10 Clacu08g1940 256282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1940 275 CDD homeodomain 202 252 IPR001356 GO:0003677(InterPro)
Clacu08g1940 275 Pfam ELK domain 169 189 IPR005539 GO:0003677(InterPro)
Clacu08g1940 275 Pfam KNOX2 domain 84 130 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1940 275 SMART HOX_1 190 255 IPR001356 GO:0003677(InterPro)
Clacu08g1940 275 SUPERFAMILY Homeodomain-like 189 261 IPR009057 -
Clacu08g1940 275 SMART KNOX1_2 30 74 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1940 275 Gene3D - 187 264 - -
Clacu08g1940 275 MobiDBLite consensus disorder prediction 1 24 - -
Clacu08g1940 275 MobiDBLite consensus disorder prediction 1 15 - -
Clacu08g1940 275 SMART ELK_2 168 189 IPR005539 GO:0003677(InterPro)
Clacu08g1940 275 Pfam Homeobox KN domain 208 247 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g1940 275 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu08g1940 275 ProSiteProfiles 'Homeobox' domain profile. 188 251 IPR001356 GO:0003677(InterPro)
Clacu08g1940 275 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 260 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu08g1940 275 SMART KNOX2_2 80 131 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1940 275 Pfam KNOX1 domain 33 73 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1533 Clacu-Chr2:28780153 Clacu08g1940 Clacu-Chr8:28411673 6.70E-67 dispersed
Clacu08g1513 Clacu-Chr8:25002143 Clacu08g1940 Clacu-Chr8:28411673 8.60E-27 dispersed
Clacu08g1841 Clacu-Chr8:27695882 Clacu08g1940 Clacu-Chr8:28411673 1.30E-53 dispersed
Clacu05g2747 Clacu-Chr5:34935468 Clacu08g1940 Clacu-Chr8:28411673 2.20E-101 wgd
Clacu06g1813 Clacu-Chr6:28667260 Clacu08g1940 Clacu-Chr8:28411673 2.90E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48252 PF03791 KNOX2 3.30E-23 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1940 - - - 0.0