Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1943 ATGGAACCACCTTTTCTGTTATGGAAACCGGTTTTTGTAGTTTTGGCACTCTTGGAACTTGCTTTTGCTACGCTATCTCCTTCTGGTGTGAACTACGAAGTTGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCAGCTTTGGGGCTACCTAGCCAGAGTTTGTCCGGGGTCTTATCACCGGGGATTGGAAATCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAACGTATTTAGTGGCCAAATACCCAGCTCCCTCGGAGACTTGAAGAAGCTGAACTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTACCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAGCAACTGTTCTGCTATCTTTCCAGAGCCATTGTCGTTTGCCCCAGATACTCTTGAAGGAAATTTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCCTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGCCATTTGAGAAGGTACACATTCAAGGAACTTAGGGCAGCAACCGATCACTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTTTGGTAGCGGTCAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACACCGAAATCTTCTCAAGCTTTTTGGCTTCTGTTCTACTGAGAGCGAAAGACTTCTGGTTTACCCATTCATGCCCAATGGCAGCGTTGCATCTCGGTTAAGAGAGCATATTCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCATGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATTCATCGGGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCTGTCGTTGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTGACTACGGCGGTGCGTGGCACTGTTGGGCATATTGCCCCAGAATACTTATCAACAGGCCAATCATCAGAAAAGACTGATGTTTTCGGGTTTGGAATCTTGCTTTTGGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAAAAGTTGCATCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGCAAGTTTGACAGAGTTGAGTTAGAGGAAATTGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGGCCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATTGAAACGCCAAGATACCGACCGTGCGAGAATCCCCCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1866 44.8 MEPPFLLWKPVFVVLALLELAFATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPSNCSAIFPEPLSFAPDTLEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVASRLREHIHGQPALDWAMRKRIAMGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNMMVDKDLRGKFDRVELEEIVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIETPRYRPCENPPQRYSDYIEESSLIVEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28435414 28438789 - ClG42_08g0194300.10 Clacu08g1943 256285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1943 621 Pfam Protein tyrosine and serine/threonine kinase 301 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1943 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1943 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 621 - -
Clacu08g1943 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Clacu08g1943 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Clacu08g1943 621 FunFam Somatic embryogenesis receptor-like kinase 1 375 591 - -
Clacu08g1943 621 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Clacu08g1943 621 SUPERFAMILY Protein kinase-like (PK-like) 282 580 IPR011009 -
Clacu08g1943 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Clacu08g1943 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Clacu08g1943 621 SMART serkin_6 298 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1943 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
Clacu08g1943 621 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 210 - -
Clacu08g1943 621 SUPERFAMILY L domain-like 31 192 - -
Clacu08g1943 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Clacu08g1943 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2462 Clacu-Chr1:35090008 Clacu08g1943 Clacu-Chr8:28435414 1.20E-157 dispersed
Clacu06g1366 Clacu-Chr6:24533775 Clacu08g1943 Clacu-Chr8:28435414 5.40E-165 dispersed
Clacu08g1943 Clacu-Chr8:28435414 Clacu10g0924 Clacu-Chr10:19182386 1.00E-139 dispersed
Clacu08g1943 Clacu-Chr8:28435414 Clacu11g0656 Clacu-Chr11:6304090 6.40E-195 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73787 PF00069 Pkinase 3.70E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1943 - - - 0.0