Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0028 ATGGGGAAAGCTACCAGATGGTTGAAGGGTTTATTGGGGATCAAGAAAGAAAAAGACCCATCTGGGAATTCAAATTCAAATTCAAATTCAACCACCCTCGCCGCCGACAGAAAGGACAAGAAACGCTGGAGTTTTGCAAAGTCCGCTAGAGATTCCGGCCAAACGCCGCCTCCACCGCCGGACACTACTTGGTTCAGATCCTCCTACATTTCTGATTCAGAGAAAGAGCAGAACAAACACGCAATTGCTGTAGCTGCAGCCACCGCCGCCGCCGCAGACGCCGCCGTCGCGGCCGCGCAAGCGGCGGTGGCCGTCGTCCGCCTGACTAGCCAAGGAAGAGGGTCTCTTTATATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCAAGAAAGGCCCTGCGAGCTCTCAAAGGGCTTGTTAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGGAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCTCTTTTTCGAGCTCAAACTGCAGTTAGAACTCAGAGAGCTCGTCGATCTTTCAACAAAGAGAACAGGTTTATCCCCGAGATTCGTCCCCGAAAATCTTCGGAACGCTTTGATGAAACAAGAAGTGAATTATTCCATAGTAAGAGGTTGTCTGTAGCATCATCTTATGACACAACCTGTATGAATTCATTGGATGAGAGTCCCAAAATTGTGGAAATCGACACCTACCGAACTCGATCGAGGTCTCGTAGGTACATTTCGACATTGTCTGAATGCGGAGGAGATGATGTAGCTTTCCAAGCAATCTCTTCATCGCCATTACCTTGTCCGAATCGACCTCGCGTTTGCCACAACAATGTGCTTCAAGACTTCGAATGGTGCTTGATGGGTGAGGACTGCAAGTTCCCTACAGCTCACAGCACGCCCCGGCTATCGAATAACTCGTTCGTCTCTGCCAACGTGCCAGTCACCCCATCCAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTGCCCCAATTATATGGCGAACACACAATCTTTCAAGGCAAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGGTCCAAGAAGAAGCTATCATTGAATGAAATAATGGCAGCAAGAAACAGCTTGAGCAGTGTAAGAATGCGAAGACCAAATAACCAAATGCTGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGAAGAAGAAGAAGAAACATCATATGGTTTTTGA 1302 47.54 MGKATRWLKGLLGIKKEKDPSGNSNSNSNSTTLAADRKDKKRWSFAKSARDSGQTPPPPPDTTWFRSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSSERFDETRSELFHSKRLSVASSYDTTCMNSLDESPKIVEIDTYRTRSRSRRYISTLSECGGDDVAFQAISSSPLPCPNRPRVCHNNVLQDFEWCLMGEDCKFPTAHSTPRLSNNSFVSANVPVTPSKSVCGDSFFRPYMNYCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMRRPNNQMLQEEEEEEEEEEDDDDDDDDEEEEETSYGF 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 358891 360664 + ClG42_09g0002800.10 Clacu09g0028 256336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0028 433 ProSiteProfiles Zinc finger C3H1-type profile. 282 314 IPR000571 GO:0046872(InterPro)
Clacu09g0028 433 MobiDBLite consensus disorder prediction 1 63 - -
Clacu09g0028 433 Coils Coil 401 424 - -
Clacu09g0028 433 Gene3D - 75 148 - -
Clacu09g0028 433 Pfam IQ calmodulin-binding motif 149 163 IPR000048 GO:0005515(InterPro)
Clacu09g0028 433 Pfam IQ calmodulin-binding motif 123 143 IPR000048 GO:0005515(InterPro)
Clacu09g0028 433 MobiDBLite consensus disorder prediction 19 33 - -
Clacu09g0028 433 ProSiteProfiles IQ motif profile. 122 150 - -
Clacu09g0028 433 MobiDBLite consensus disorder prediction 359 433 - -
Clacu09g0028 433 PANTHER IQ-DOMAIN 5-RELATED 6 385 - -
Clacu09g0028 433 MobiDBLite consensus disorder prediction 385 400 - -
Clacu09g0028 433 ProSiteProfiles IQ motif profile. 146 173 - -
Clacu09g0028 433 SMART iq_5 144 165 IPR000048 GO:0005515(InterPro)
Clacu09g0028 433 SMART iq_5 121 143 IPR000048 GO:0005515(InterPro)
Clacu09g0028 433 Pfam Protein of unknown function (DUF4005) 311 396 IPR025064 -
Clacu09g0028 433 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1648 Clacu-Chr3:30114214 Clacu09g0028 Clacu-Chr9:358891 7.00E-84 dispersed
Clacu09g0028 Clacu-Chr9:358891 Clacu09g2069 Clacu-Chr9:35494288 6.80E-10 dispersed
Clacu07g1334 Clacu-Chr7:28217188 Clacu09g0028 Clacu-Chr9:358891 2.20E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0028 - - - 0.0