Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g0028 | ATGGGGAAAGCTACCAGATGGTTGAAGGGTTTATTGGGGATCAAGAAAGAAAAAGACCCATCTGGGAATTCAAATTCAAATTCAAATTCAACCACCCTCGCCGCCGACAGAAAGGACAAGAAACGCTGGAGTTTTGCAAAGTCCGCTAGAGATTCCGGCCAAACGCCGCCTCCACCGCCGGACACTACTTGGTTCAGATCCTCCTACATTTCTGATTCAGAGAAAGAGCAGAACAAACACGCAATTGCTGTAGCTGCAGCCACCGCCGCCGCCGCAGACGCCGCCGTCGCGGCCGCGCAAGCGGCGGTGGCCGTCGTCCGCCTGACTAGCCAAGGAAGAGGGTCTCTTTATATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCAAGAAAGGCCCTGCGAGCTCTCAAAGGGCTTGTTAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGGAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCTCTTTTTCGAGCTCAAACTGCAGTTAGAACTCAGAGAGCTCGTCGATCTTTCAACAAAGAGAACAGGTTTATCCCCGAGATTCGTCCCCGAAAATCTTCGGAACGCTTTGATGAAACAAGAAGTGAATTATTCCATAGTAAGAGGTTGTCTGTAGCATCATCTTATGACACAACCTGTATGAATTCATTGGATGAGAGTCCCAAAATTGTGGAAATCGACACCTACCGAACTCGATCGAGGTCTCGTAGGTACATTTCGACATTGTCTGAATGCGGAGGAGATGATGTAGCTTTCCAAGCAATCTCTTCATCGCCATTACCTTGTCCGAATCGACCTCGCGTTTGCCACAACAATGTGCTTCAAGACTTCGAATGGTGCTTGATGGGTGAGGACTGCAAGTTCCCTACAGCTCACAGCACGCCCCGGCTATCGAATAACTCGTTCGTCTCTGCCAACGTGCCAGTCACCCCATCCAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTGCCCCAATTATATGGCGAACACACAATCTTTCAAGGCAAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGGTCCAAGAAGAAGCTATCATTGAATGAAATAATGGCAGCAAGAAACAGCTTGAGCAGTGTAAGAATGCGAAGACCAAATAACCAAATGCTGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGAAGAAGAAGAAGAAACATCATATGGTTTTTGA | 1302 | 47.54 | MGKATRWLKGLLGIKKEKDPSGNSNSNSNSTTLAADRKDKKRWSFAKSARDSGQTPPPPPDTTWFRSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSSERFDETRSELFHSKRLSVASSYDTTCMNSLDESPKIVEIDTYRTRSRSRRYISTLSECGGDDVAFQAISSSPLPCPNRPRVCHNNVLQDFEWCLMGEDCKFPTAHSTPRLSNNSFVSANVPVTPSKSVCGDSFFRPYMNYCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMRRPNNQMLQEEEEEEEEEEDDDDDDDDEEEEETSYGF | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 358891 | 360664 | + | ClG42_09g0002800.10 | Clacu09g0028 | 256336 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g0028 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 282 | 314 | IPR000571 | GO:0046872(InterPro) | |
Clacu09g0028 | 433 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Clacu09g0028 | 433 | Coils | Coil | 401 | 424 | - | - | |
Clacu09g0028 | 433 | Gene3D | - | 75 | 148 | - | - | |
Clacu09g0028 | 433 | Pfam | IQ calmodulin-binding motif | 149 | 163 | IPR000048 | GO:0005515(InterPro) | |
Clacu09g0028 | 433 | Pfam | IQ calmodulin-binding motif | 123 | 143 | IPR000048 | GO:0005515(InterPro) | |
Clacu09g0028 | 433 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - | |
Clacu09g0028 | 433 | ProSiteProfiles | IQ motif profile. | 122 | 150 | - | - | |
Clacu09g0028 | 433 | MobiDBLite | consensus disorder prediction | 359 | 433 | - | - | |
Clacu09g0028 | 433 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 385 | - | - | |
Clacu09g0028 | 433 | MobiDBLite | consensus disorder prediction | 385 | 400 | - | - | |
Clacu09g0028 | 433 | ProSiteProfiles | IQ motif profile. | 146 | 173 | - | - | |
Clacu09g0028 | 433 | SMART | iq_5 | 144 | 165 | IPR000048 | GO:0005515(InterPro) | |
Clacu09g0028 | 433 | SMART | iq_5 | 121 | 143 | IPR000048 | GO:0005515(InterPro) | |
Clacu09g0028 | 433 | Pfam | Protein of unknown function (DUF4005) | 311 | 396 | IPR025064 | - | |
Clacu09g0028 | 433 | MobiDBLite | consensus disorder prediction | 405 | 433 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g1648 | Clacu-Chr3:30114214 | Clacu09g0028 | Clacu-Chr9:358891 | 7.00E-84 | dispersed | |
Clacu09g0028 | Clacu-Chr9:358891 | Clacu09g2069 | Clacu-Chr9:35494288 | 6.80E-10 | dispersed | |
Clacu07g1334 | Clacu-Chr7:28217188 | Clacu09g0028 | Clacu-Chr9:358891 | 2.20E-44 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g0028 | - | - | - | 0.0 |