Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Clacu09g0029	ATGGGAAATTGTTTGCTCTTAATTCATCCAAGGTTTGACTGCCTCTTCTCTGTTCTCTCTTGTTCTGGAATAATTTTTTTTACTGAATTCCAATGTATTGAACTTGAACCCAGCAGTTTGGTACAGCACCAGTTCGCTGTCACTTTCATGGGGCTGATTCCGCAGTCAGGATACCAGGGTGTAGTCTCGCATTGTGTTAGGAAGCATTTTTGTTACAGCCATAATTCGAGGAAGTCATCAAAAAGGGGGATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGGTGGGTAGTTCTAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGATACTCTACTGTTAAATTTTCAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGGTATGGTTTTTTACTCTAATGGACTGATTAATATTATGAACCAGAATATTAGCAGAATGGAAATTGGTGGTAAGATTTGGGGCTTGTTTCTCCAACTCAAAGAATTTAATTGGTGTAGGACATTGGATTGTTTGGAAAAAATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG	1377	43.28	MGNCLLLIHPRFDCLFSVLSCSGIIFFTEFQCIELEPSSLVQHQFAVTFMGLIPQSGYQGVVSHCVRKHFCYSHNSRKSSKRGMAFRGRGRGRGGGGGAFQYAKQEPFELFPEVGSSNVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEDTLLLNFQVSKGSCRPKEKFNGIPAQGQDKDDKEKKEGEEGEDEDEDEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGGGMVFYSNGLINIMNQNISRMEIGGKIWGLFLQLKEFNWCRTLDCLEKMSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL	458

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
9	366032	373051	-	ClG42_09g0002900.10	Clacu09g0029	256337

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Clacu09g0029	458	FunFam	Profilin	328	458	-	-
Clacu09g0029	458	MobiDBLite	consensus disorder prediction	237	277	-	-
Clacu09g0029	458	PRINTS	Profilin signature	367	387	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Profilin signature	330	339	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Profilin signature	427	440	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Profilin signature	348	357	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Profilin signature	391	405	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Profilin signature	440	457	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	Pfam	Profilin	328	456	IPR048278	GO:0003779(InterPro)
Clacu09g0029	458	SUPERFAMILY	Profilin (actin-binding protein)	329	456	IPR036140	-
Clacu09g0029	458	PRINTS	Plant profilin signature	431	444	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Plant profilin signature	354	367	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Plant profilin signature	379	393	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Plant profilin signature	444	457	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Plant profilin signature	411	426	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Plant profilin signature	398	407	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	PRINTS	Plant profilin signature	328	341	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	CDD	PROF	329	456	IPR005455	GO:0003779(InterPro)
Clacu09g0029	458	MobiDBLite	consensus disorder prediction	215	278	-	-
Clacu09g0029	458	Gene3D	Dynein light chain 2a, cytoplasmic	326	457	-	-
Clacu09g0029	458	PANTHER	DNA-DIRECTED RNA POLYMERASE III	84	280	IPR024661	GO:0005666(PANTHER)\|GO:0006383(InterPro)
Clacu09g0029	458	SMART	prof_2	328	458	IPR005455	GO:0003779(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Clacu09g0029	K05759	-	-	cit:102614190	243.817

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Clacu09g0029	Clacu-Chr9:366032	Clacu11g0347	Clacu-Chr11:3143179	3.10E-61	dispersed
	Clacu07g1338	Clacu-Chr7:28238065	Clacu09g0029	Clacu-Chr9:366032	4.00E-57	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi9g262	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cpe12g00642	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Lsi02g02979	Csa07g02434	.	Cme01g02890	.	.	.	.	.	.	.	.	Sed07g1412	.	.	.	.	.	Car17g00702	.	.	Bhi09g00473	Tan06g0229	.	.	.	.	.	Cla09g00023	Cam09g0025	Cec09g0023	Cco09g0026	Clacu09g0029	.	Cre09g0023	.	.	Chy01g02242	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Clacu04g0866	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.8	7.6e-215	743.0
Clacu10g1739	.	56	432	Cytoskeleton Gene Families	AT2G37620	96.8	7.6e-215	743.0
Clacu02g2076	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.3	3.8e-214	740.7
Clacu07g0312	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.0	1.9e-213	738.4
Clacu01g1629	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	2.4e-213	738.0
Clacu02g0071	.	1	377	Cytoskeleton Gene Families	AT2G37620	95.5	2.4e-213	738.0
Clacu09g2010	.	1	377	Cytoskeleton Gene Families	AT2G37620	96.0	1.2e-212	735.7
Clacu09g1411	.	32	408	Cytoskeleton Gene Families	AT2G37620	94.7	2.1e-212	734.9
Clacu09g2010	.	1	377	Cytoskeleton Gene Families	AT5G59370	97.1	2.2e-214	741.5
Clacu02g2076	.	1	377	Cytoskeleton Gene Families	AT5G59370	97.1	4.9e-214	740.3
Clacu10g1739	.	56	432	Cytoskeleton Gene Families	AT5G59370	97.1	6.4e-214	740.0
Clacu07g0312	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	1.4e-213	738.8
Clacu04g0866	.	1	377	Cytoskeleton Gene Families	AT5G59370	96.6	7.1e-213	736.5
Clacu09g1411	.	32	408	Cytoskeleton Gene Families	AT5G59370	93.9	8.7e-211	729.6
Clacu01g1629	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	3.3e-210	727.6
Clacu02g0071	.	1	377	Cytoskeleton Gene Families	AT5G59370	94.4	3.3e-210	727.6
Clacu09g2010	.	1	377	Cytoskeleton Gene Families	AT3G46520	97.3	9.9e-215	742.7
Clacu10g1739	.	56	432	Cytoskeleton Gene Families	AT3G46520	97.3	2.9e-214	741.1
Clacu07g0312	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	6.4e-214	740.0
Clacu02g2076	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	1.4e-213	738.8
Clacu04g0866	.	1	377	Cytoskeleton Gene Families	AT3G46520	96.8	3.2e-213	737.6
Clacu09g1411	.	32	408	Cytoskeleton Gene Families	AT3G46520	94.2	3.9e-211	730.7
Clacu01g1629	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	1.5e-210	728.8
Clacu02g0071	.	1	377	Cytoskeleton Gene Families	AT3G46520	94.7	1.5e-210	728.8
Clacu10g1739	.	56	432	Cytoskeleton Gene Families	AT3G12110	97.1	3.4e-215	744.2
Clacu07g0312	.	1	377	Cytoskeleton Gene Families	AT3G12110	97.1	4.4e-215	743.8
Clacu02g2076	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.6	1.7e-214	741.9
Clacu04g0866	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.6	3.8e-214	740.7
Clacu09g2010	.	1	377	Cytoskeleton Gene Families	AT3G12110	96.3	1.9e-213	738.4
Clacu01g1629	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	9.2e-213	736.1
Clacu02g0071	.	1	377	Cytoskeleton Gene Families	AT3G12110	95.5	9.2e-213	736.1
Clacu09g1411	.	32	408	Cytoskeleton Gene Families	AT3G12110	95.0	2.7e-212	734.6
Clacu09g2010	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.8	2.8e-209	724.5
Clacu01g1629	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	4.7e-209	723.8
Clacu02g0071	.	1	377	Cytoskeleton Gene Families	AT3G18780	93.1	4.7e-209	723.8
Clacu04g0866	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.6	1.8e-208	721.8
Clacu10g1739	.	56	432	Cytoskeleton Gene Families	AT3G18780	92.3	1.8e-208	721.8
Clacu07g0312	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.3	2.4e-208	721.5
Clacu02g2076	.	1	377	Cytoskeleton Gene Families	AT3G18780	92.0	9.0e-208	719.5
Clacu09g1411	.	32	408	Cytoskeleton Gene Families	AT3G18780	92.0	1.2e-207	719.2
Clacu09g2010	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.1	9.6e-210	726.1
Clacu01g1629	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	1.6e-209	725.3
Clacu02g0071	.	1	377	Cytoskeleton Gene Families	AT1G49240	93.4	1.6e-209	725.3
Clacu10g1739	.	56	432	Cytoskeleton Gene Families	AT1G49240	92.6	6.2e-209	723.4
Clacu07g0312	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.6	8.1e-209	723.0
Clacu04g0866	.	1	377	Cytoskeleton Gene Families	AT1G49240	92.3	4.0e-208	720.7
Clacu09g1411	.	32	408	Cytoskeleton Gene Families	AT1G49240	92.3	4.0e-208	720.7
Clacu02g2076	.	1	377	Cytoskeleton Gene Families	AT1G49240	91.8	2.0e-207	718.4
Clacu01g1629	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	8.1e-217	749.6
Clacu02g0071	.	1	377	Cytoskeleton Gene Families	AT5G09810	98.4	8.1e-217	749.6
Clacu09g1411	.	32	408	Cytoskeleton Gene Families	AT5G09810	95.8	2.9e-214	741.1
Clacu10g1739	.	56	432	Cytoskeleton Gene Families	AT5G09810	96.6	6.4e-214	740.0
Clacu04g0866	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.3	1.9e-213	738.4
Clacu02g2076	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	3.2e-213	737.6
Clacu07g0312	.	1	377	Cytoskeleton Gene Families	AT5G09810	96.0	3.2e-213	737.6
Clacu09g2010	.	1	377	Cytoskeleton Gene Families	AT5G09810	95.8	3.5e-212	734.2
Clacu11g0347	.	1	133	Cytoskeleton Gene Families	AT2G19760	76.7	8.6e-57	216.5
Clacu09g0029	.	328	458	Cytoskeleton Gene Families	AT2G19760	72.5	3.6e-55	211.1
Clacu07g1338	.	532	662	Cytoskeleton Gene Families	AT2G19760	73.3	1.8e-54	208.8
Clacu11g1685	.	325	455	Cytoskeleton Gene Families	AT2G19760	73.3	5.2e-54	207.2
Clacu11g0348	.	1	111	Cytoskeleton Gene Families	AT2G19760	79.3	1.1e-48	189.5
Clacu11g0347	.	1	133	Cytoskeleton Gene Families	AT4G29350	76.7	1.5e-56	215.7
Clacu09g0029	.	328	458	Cytoskeleton Gene Families	AT4G29350	73.3	1.4e-54	209.1
Clacu07g1338	.	532	662	Cytoskeleton Gene Families	AT4G29350	71.8	2.0e-53	205.3
Clacu11g1685	.	325	455	Cytoskeleton Gene Families	AT4G29350	71.0	8.3e-52	199.9
Clacu11g0348	.	1	111	Cytoskeleton Gene Families	AT4G29350	79.3	1.6e-47	185.7
Clacu11g0348	.	1	87	Cytoskeleton Gene Families	AT5G56600	78.2	5.7e-38	153.7
Clacu11g0347	.	1	133	Cytoskeleton Gene Families	AT4G29340	84.3	1.5e-64	242.3
Clacu09g0029	.	328	458	Cytoskeleton Gene Families	AT4G29340	73.9	3.0e-57	218.0
Clacu11g1685	.	325	455	Cytoskeleton Gene Families	AT4G29340	73.1	2.4e-54	208.4
Clacu07g1338	.	532	662	Cytoskeleton Gene Families	AT4G29340	67.9	5.0e-52	200.7
Clacu11g0348	.	1	112	Cytoskeleton Gene Families	AT4G29340	67.0	7.2e-43	170.2

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0006666	1	7	0	0	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	4	4	1	38