Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g0029 | ATGGGAAATTGTTTGCTCTTAATTCATCCAAGGTTTGACTGCCTCTTCTCTGTTCTCTCTTGTTCTGGAATAATTTTTTTTACTGAATTCCAATGTATTGAACTTGAACCCAGCAGTTTGGTACAGCACCAGTTCGCTGTCACTTTCATGGGGCTGATTCCGCAGTCAGGATACCAGGGTGTAGTCTCGCATTGTGTTAGGAAGCATTTTTGTTACAGCCATAATTCGAGGAAGTCATCAAAAAGGGGGATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGGTGGGTAGTTCTAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGATACTCTACTGTTAAATTTTCAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGGTATGGTTTTTTACTCTAATGGACTGATTAATATTATGAACCAGAATATTAGCAGAATGGAAATTGGTGGTAAGATTTGGGGCTTGTTTCTCCAACTCAAAGAATTTAATTGGTGTAGGACATTGGATTGTTTGGAAAAAATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG | 1377 | 43.28 | MGNCLLLIHPRFDCLFSVLSCSGIIFFTEFQCIELEPSSLVQHQFAVTFMGLIPQSGYQGVVSHCVRKHFCYSHNSRKSSKRGMAFRGRGRGRGGGGGAFQYAKQEPFELFPEVGSSNVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEDTLLLNFQVSKGSCRPKEKFNGIPAQGQDKDDKEKKEGEEGEDEDEDEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGGGMVFYSNGLINIMNQNISRMEIGGKIWGLFLQLKEFNWCRTLDCLEKMSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 366032 | 373051 | - | ClG42_09g0002900.10 | Clacu09g0029 | 256337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g0029 | 458 | FunFam | Profilin | 328 | 458 | - | - | |
Clacu09g0029 | 458 | MobiDBLite | consensus disorder prediction | 237 | 277 | - | - | |
Clacu09g0029 | 458 | PRINTS | Profilin signature | 367 | 387 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Profilin signature | 330 | 339 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Profilin signature | 427 | 440 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Profilin signature | 348 | 357 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Profilin signature | 391 | 405 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Profilin signature | 440 | 457 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | Pfam | Profilin | 328 | 456 | IPR048278 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | SUPERFAMILY | Profilin (actin-binding protein) | 329 | 456 | IPR036140 | - | |
Clacu09g0029 | 458 | PRINTS | Plant profilin signature | 431 | 444 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Plant profilin signature | 354 | 367 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Plant profilin signature | 379 | 393 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Plant profilin signature | 444 | 457 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Plant profilin signature | 411 | 426 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Plant profilin signature | 398 | 407 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | PRINTS | Plant profilin signature | 328 | 341 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | CDD | PROF | 329 | 456 | IPR005455 | GO:0003779(InterPro) | |
Clacu09g0029 | 458 | MobiDBLite | consensus disorder prediction | 215 | 278 | - | - | |
Clacu09g0029 | 458 | Gene3D | Dynein light chain 2a, cytoplasmic | 326 | 457 | - | - | |
Clacu09g0029 | 458 | PANTHER | DNA-DIRECTED RNA POLYMERASE III | 84 | 280 | IPR024661 | GO:0005666(PANTHER)|GO:0006383(InterPro) | |
Clacu09g0029 | 458 | SMART | prof_2 | 328 | 458 | IPR005455 | GO:0003779(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu09g0029 | Clacu-Chr9:366032 | Clacu11g0347 | Clacu-Chr11:3143179 | 3.10E-61 | dispersed | |
Clacu07g1338 | Clacu-Chr7:28238065 | Clacu09g0029 | Clacu-Chr9:366032 | 4.00E-57 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g0029 | K05759 | - | cit:102614190 | 243.817 |