Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0037 ATGGATGTTTCAACATATTTGCTCTCTGCTTTTCTGAGTGGCCTAGCTCTTCTCAATCTTGTTCAAGCTCAAGGTCAATTAGGCTTCATAAGCTTAGATTGTGGATTGCCACCAAACACAAACTACATTGAACCAACAACAACACTTCAATTTACTTCTGATGCTGCTTATATAAACAGTGGTGAAAGCAAAAGCTTATCCTCTAATTATAACGAATATCTACAACGACAATATCTTCATGTTAGAAGCTTTACCCAAGGACGTAGGAATTGCTACAATCTAAGTGTAAAAAGGGATACAAAATATTTGATGCGAGCAAGTTTTTTCTATGGAAATTACGATGGGCTCAGCCAACTGCCGAAATTCGATCTCTATTTTGGAGATAGCTTATGGAAGACAGTGAATTTTACTGATGAAAACACATATACCACAATAGATTCCATACATGTAACCTCAGACAATCAAGTACAAATTTGTCTCGTCAACACAAACACTGGAACTCCATTCATCTCTTCATTGGAATTCAGACCTTTGCCAAATGAGACTTATAAGTTCTTGACAAGATCGTTGTTGCTTTACTATCGATTAGATATGGGTACAACAACGAACGAAACATACAGGTTTCCTGGTGATATATATGATCGATTTTGGACGCCTTTCAATTGGTACGAGTGGACAAGCATAAGTACCACACTTAAGATAGATTCAGCTGATAATAATTACTACCAGCCAGGATCTGCTGTCATGGGAACTGCAGCTATTAGAATAGATACAAAAAAGCCTATGGAAATTTGGTGGGAGCCTGAAGATGAAAACACCCAGTATTATGTATACATGCACTTTGCTGAAGTTGAAAATCTCCAAGCCAATCAATCCAGAGGATTCAACGTCACTTATAATGGGAGTTTTTGGTATGGTCCTCTCATTCCCAACTACTTGTCAACAATAACGCTCTACAATCGAGGGCCATTACCAACACCAAATAAAAAGCATCTGTTCTCATTTATACAAATTGAAAATTCAACACGCCCTCCAATCATAAATGCTATGGAAATTTATTCTGTAATAGATCTATCAGAGCTAACGTCAGATCAAGGAGATGTGGATGCAATAACAAGCATCAAGTCAACTTACGGAATAGTCAGAGATTGGGAAGGAGATCCATGTGTTCCAAGAGCATACCCTTGGGAGGGTATAGATTGTACCAAAACAAATGGAACTGCTCCTAGAATCGTGTCTTTGAATTTGTCATCAAGTGGATTGACAGGAGAGATTTCTCAAAGTATAGAGAATCTACAAATGATACAAATATTGGACTTGTCAAACAATGGCTTGACGGGAACTATCCCTGATTTTCTGTCTAACTTGTCAAACCTTGAAGTCTTAAAGTTAGACAACAACAAGCTTTCAGGCTCTATTCCATCTGAACTCGTTAAGAGACTCAATAATGGTTCATTAACGTTAAGTGTTCAAGGGAATCCAAATCTAGATTGCATATCAAATTCGTGCAAGAGTAAGAAGACTAGTGTTGTTATTCCAATTGTAGCATCAATTGGCGGAGTGGTAGTCATCATTGTAGTTTCAATCATCATCCTTTGGATTGTTAAATCAAGGAAGAAACGAAAAAATGAAACCGTTGTTCCAAAGGTGGATCCCTCAGGAAGCAATGACCAAATAAGTGATCAGTTGTTGGAGACAAGGAGGCGGCAGTTCACATATTCAGAAGTCTTGAGGATGACCAACAATTTCGAGAGAATCCTAGGAAAAGGAGGTTTCGGGATGGTTTATTATGGCACCATAAATGACACTCAAGTGGCTGTGAAGATGCTATCTCAAGCTTCAGGTCAAGGTTATCAACAGTTTCAAGCAGAGGTTACACTTCTTTTGAGGGTTCACCACAAAAACTTGACAAGTCTTGTGGGGTATTTGAATGAAGGAGACCGCCTTGGGCTCATTTATGAGTTCATGGCCAAAGGAAACTTAGCAGAGCATCTTTCAGAAACGAGTTCCTATGTCTTAAGTTGGCAAGATAGGCTCCGGATAGCCATGGATGCAGCACAAGGATTGGAGTACCTACACGATGGTTGCAAGCCACCCATAATCCATAGAGATGTGAAAACAACAAACATCTTATTGACAGAGAATTTCCAAGCCAAACTTGCAGATTTTGGTTTATCCAAAAGCTTCCCAGTAGATGGCAACAAAACTAACAACTACATGTCCACCATTGTTGCTGGAACCCCTGGTTACCTTGATCCAGACTACTACTTATCGAACAGGCTGACGGAGAAAAGCGATGTGTACAGCTTTGGAGTGGTTCTGTTGGAGATAATCAGCTGCAGACCTGTGATATCAAGAAGCGAAGAAAATGGTCATATCAGTAAATGGGTGAACTCGATGGTGGCTCAAGGGGACATAAATGGAATAGTTGATGAAAGATTGAGAGGAAAATATGATGGTAACTCAGTTTGGAAGGCAGTGGAGGTGGCGTTGAGTTGTGTATCTGTGAACTCTGGAAAAAGACCGACGATGAACCACGTGGTGGCGGAACTGAAGAGTTGTCTGGCCATGGAATTGGAACGGACGCCGGAGAGTCAAGGTTTCGATTCGACGAATTCCGTTAACATGATGTCCATTGTTATGGATTACAGTGAATCCGCACCAATGGCGAGGTGA 2676 40.17 MDVSTYLLSAFLSGLALLNLVQAQGQLGFISLDCGLPPNTNYIEPTTTLQFTSDAAYINSGESKSLSSNYNEYLQRQYLHVRSFTQGRRNCYNLSVKRDTKYLMRASFFYGNYDGLSQLPKFDLYFGDSLWKTVNFTDENTYTTIDSIHVTSDNQVQICLVNTNTGTPFISSLEFRPLPNETYKFLTRSLLLYYRLDMGTTTNETYRFPGDIYDRFWTPFNWYEWTSISTTLKIDSADNNYYQPGSAVMGTAAIRIDTKKPMEIWWEPEDENTQYYVYMHFAEVENLQANQSRGFNVTYNGSFWYGPLIPNYLSTITLYNRGPLPTPNKKHLFSFIQIENSTRPPIINAMEIYSVIDLSELTSDQGDVDAITSIKSTYGIVRDWEGDPCVPRAYPWEGIDCTKTNGTAPRIVSLNLSSSGLTGEISQSIENLQMIQILDLSNNGLTGTIPDFLSNLSNLEVLKLDNNKLSGSIPSELVKRLNNGSLTLSVQGNPNLDCISNSCKSKKTSVVIPIVASIGGVVVIIVVSIIILWIVKSRKKRKNETVVPKVDPSGSNDQISDQLLETRRRQFTYSEVLRMTNNFERILGKGGFGMVYYGTINDTQVAVKMLSQASGQGYQQFQAEVTLLLRVHHKNLTSLVGYLNEGDRLGLIYEFMAKGNLAEHLSETSSYVLSWQDRLRIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQAKLADFGLSKSFPVDGNKTNNYMSTIVAGTPGYLDPDYYLSNRLTEKSDVYSFGVVLLEIISCRPVISRSEENGHISKWVNSMVAQGDINGIVDERLRGKYDGNSVWKAVEVALSCVSVNSGKRPTMNHVVAELKSCLAMELERTPESQGFDSTNSVNMMSIVMDYSESAPMAR 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 428384 432654 + ClG42_09g0003700.10 Clacu09g0037 256345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0037 891 Gene3D Phosphorylase Kinase; domain 1 563 655 - -
Clacu09g0037 891 ProSitePatterns Protein kinases ATP-binding region signature. 587 608 IPR017441 GO:0005524(InterPro)
Clacu09g0037 891 CDD STKc_IRAK 587 852 - -
Clacu09g0037 891 Pfam Leucine Rich Repeat 435 456 IPR001611 GO:0005515(InterPro)
Clacu09g0037 891 Pfam Leucine Rich Repeat 458 477 IPR001611 GO:0005515(InterPro)
Clacu09g0037 891 SUPERFAMILY L domain-like 394 482 - -
Clacu09g0037 891 FunFam Leucine-rich repeat receptor-like kinase 367 499 - -
Clacu09g0037 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0037 891 FunFam Leucine-rich repeat receptor-like protein kinase 558 655 - -
Clacu09g0037 891 Gene3D Transferase(Phosphotransferase) domain 1 656 874 - -
Clacu09g0037 891 Gene3D Ribonuclease Inhibitor 368 497 IPR032675 -
Clacu09g0037 891 SUPERFAMILY Protein kinase-like (PK-like) 557 851 IPR011009 -
Clacu09g0037 891 PANTHER OS07G0107800 PROTEIN-RELATED 21 859 - -
Clacu09g0037 891 SMART serkin_6 581 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0037 891 ProSiteProfiles Protein kinase domain profile. 581 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0037 891 Pfam Malectin-like domain 32 355 IPR024788 -
Clacu09g0037 891 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 656 863 - -
Clacu09g0037 891 Pfam Protein tyrosine and serine/threonine kinase 583 851 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1347 Clacu-Chr7:28297381 Clacu09g0037 Clacu-Chr9:428384 2.30E-214 dispersed
Clacu07g1348 Clacu-Chr7:28307272 Clacu09g0037 Clacu-Chr9:428384 2.50E-172 dispersed
Clacu09g0037 Clacu-Chr9:428384 Clacu09g0039 Clacu-Chr9:446381 2.50E-253 dispersed
Clacu09g0037 Clacu-Chr9:428384 Clacu09g0038 Clacu-Chr9:436207 3.10E-299 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73792 PF12819 Malectin_like 2.50E-109 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0037 - - - 0.0