Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0038 ATGACAAATAATTTTGAGAGAATTCTGGGCGAAGGAGGTTTTGGGATGGTTTACTATGGCCTCACCAACAACGTTCAAGTGGCTGTAAAGTTACTTTCTCAAGCATCAGGGCAAGGCTATCAACAGTTCCAAGCAGAGAGATGTGAAAACAACAATGCAGATTTTGGTTTATCCAAAAGCTTTCAAACAGAAGGCAACGACACCCATATGTCCACCATTGTTGCTGGCACTATTGGTTACCTTGATCCAGACTGCAAACCTGTAAGACCACTAACTGACACGGATATTCATATCATCAAATGGGTAAACTCCCTGCCTGTTCGAGGGGATATTAACGGCATAATTGACCGAAGATTGAATGGAAATTATGATGTGAACTCAGTTTGGAAGGCAGTGGAAATAGCGATGAATTGTGTATCCAAGAAGCCTACAAGAAGACCGACAATGAACCAAGTGGTGGCAGAACTAAAGAATTGCTTGGCAATGGAATTGGAACGGATGCCGGAGAACGAAGCTTCCAATTCCATGTCCATTGTTATGGATTACAGTGTATCCCGTCCAATGGCAAGTTTAACTCTTCTACTTCTTGTTCAAGCCCAGGAGCAGACAGGCTTCATTAGTTTAGACTGTGGAATACCAGAGAGTACAAGTTACACTGAAACAACGACCAAGATCGACTATGTTTCTGATGCACCCTACATAAATAGTGGTGTAAGTGGAAGCGTAGCTTCAATTTATGAAGACACCTACCAAAGGCAAATGCTCAAACTTAGAAGCTTCCCCCAAGGAATCAGAAATTGTTACAATGTAAGCATTAGAAAGGATACCAAATACTTGATTCGAGCAAGTTTCTTATATGGGAATTATGATAGCCTAAATTCTCTACCAAAGTTTGATCTCTATATTGGGAATAGCTTATGGGAGACAATAAGCTTCACTGAAGTTGGCAAAGATGTTCTCGAAGATCTCATACATGTTACCTCCTCAAATGAAGTTCACATCTGTCTGATCAACACAGGAAATGGGGTGCCATTTATCTCAGCCTTAGAATTTAGACCTTTACTCAACGTCACTTATCAAACAGCCTCAGGATCTTTATCACTGTATTCTCGAATGGATATTGGTTCAACCGAAAATCGAACATACAGGTTCCCTTTTGATGTTTATGATCGCACCTGGGCACCATTTAACTTCAATGCGTGGACACAAGTGAGCACCAATCAAACTGTGGATGCAACTGATCACAACAATCACCAACCGCCATCAGTTGTCATGAAAACTGCCTCCGCCGCAAAAAATGCGAGCAACCCACTGGAAATTTGGTGGGATACAGAAGATTCATCTCGATATTATGTATTTCTCCACTTTGCTGAAGTTGTAGAGCTTCAAGGCAACCAGAGTAGAGGATTCAATATCATGCACAATGAGGATCTTTTTCATGGACCTCTAATTCCAACTTATTTATCTACACAGACCATTTTTCACCACAAACCATTGGATGAAGCAGATAGACATACATTTTCTTTAATTCCAATAGAGAATGCAACACTTCCTCCAATCTTTAATGCTTTCGAGATATATTCACTGAAAGATATATCAGAGTTAGAGGCAGACAAAGGAGACGTGGATGCAATTACCAATATCAAGTCAACCTATGCGGTAAAGAAGGATTGGCAAGGAGATCCATGCGTGCCAATGGGATATCCCTGGAGTGGATTAAATTGTAGCAATGAAGCTGCACCAAGAATCATTTCCTTGAACTTATCTGCAAGTAGACTGAAAGGTGAAATATCTTCTTACATATCCAGTCTAACCATGTTGCAAACTTTGGACTTGTCAAACAATAATTTGACAGGGCAAGTGCCTGATTTCCTGTCTAGTTTGTCAGACCTCAAAACTCTGAACCTAGGCAACAACAAGCTCTCAGGTCCAATTCCGGCTGAGCTTTTGAAAAGATCCAATGATGGCTCACTATCATTAAGTGTGGGAGGTAACCAAAATCTCGATGGATGTACATCAGATCCATGTCCAAAGAATGAGAAGAAGAAGAACAACATCATCATTCCAATTGTAGCATCAATTGGTGGATTCCTAGTTGTCGTTACATTTGCTGCAGTAACCTTTTGGATCATCAAATCTCGAAAGAAACAAGAAGGTAAAAATGTTGTCTCAGTGGTGGATAAGTCAGAAACTAACAGTCAATTTGGTAATTCATTGGAGGTGAGAAGGCGTCAATTTACATATTCTGAGGTGGTGAAAATGACAAACAATTTCAGTAAAGTTTTGGGTAAAGGAGGTTTCGGAAAGGTCTATTATGGTGTCATTGATGAAATTCAAGTGGCAGTGAAGATGTTGTCTTTATCATCACCACAAGGATATCGGCAATTTCAAGCAGAGGTTACCCATCTTATGAGAGTTCACCACAGAAACTTGACCAGCCTCGTTGGATATTTGAATGAAGGAGATCACCTTGGCCTAATTTACGAGTACATGGCCAATGGAGATTTGGCCAAACACCTTTCAGAGAGGAGTGTACATATCCTAAGCTGGGAAAACAGACTTCGAATAGCAATGGATGCAGCTCAAGGATTGGAGTACTTGCATTATGGTTGTAAGCCACCCATAGTTCACAGAGATGTGAAAACAACAAACATCTTATTGACAGATAATTTCCAAGGCAAACTTGCAGATTTTGGTCTTTCCAAAAGCTTCCCCAGAGATGGAAACACCCACATGTCCACGGTTGTTGCTGGCACTCCTGGTTACCTTGATCCAGAGTACTACGTATCAAACAGGCTAACAGAGAAAAGCGATGTATACAGCTTTGGGATAGCTCTATTGGAGATAATCAGTTGCAAACCAGTAATATCAAGAACCGGAGATACACCACATATAGCTAAATGGGTTACCTCTTTGCTGGCGCGAGGAGATATCCAGAGTATAGTTGATCCCAGATTAGAAGGGCAATATGAAACAAACTCTGTTTGGAAGACGGTGGAAGTGGCAATGGCTTGTGTAGCGGCAAATTCCAGTAGAAGGCCGACGATGAGCGACATTGTGGCGGAACTTAAAGATTGTTTAGCTACGGAATTGAGCCGAAAGCTTGAGAATCGTTCGCTTGATTCGACAAATTCCACTGAAATGAGGTCCATCTCTGTAGGATTTAATGCTTCCGATTCAAATCCCATGGCGAGGTGA 3198 41.18 MTNNFERILGEGGFGMVYYGLTNNVQVAVKLLSQASGQGYQQFQAERCENNNADFGLSKSFQTEGNDTHMSTIVAGTIGYLDPDCKPVRPLTDTDIHIIKWVNSLPVRGDINGIIDRRLNGNYDVNSVWKAVEIAMNCVSKKPTRRPTMNQVVAELKNCLAMELERMPENEASNSMSIVMDYSVSRPMASLTLLLLVQAQEQTGFISLDCGIPESTSYTETTTKIDYVSDAPYINSGVSGSVASIYEDTYQRQMLKLRSFPQGIRNCYNVSIRKDTKYLIRASFLYGNYDSLNSLPKFDLYIGNSLWETISFTEVGKDVLEDLIHVTSSNEVHICLINTGNGVPFISALEFRPLLNVTYQTASGSLSLYSRMDIGSTENRTYRFPFDVYDRTWAPFNFNAWTQVSTNQTVDATDHNNHQPPSVVMKTASAAKNASNPLEIWWDTEDSSRYYVFLHFAEVVELQGNQSRGFNIMHNEDLFHGPLIPTYLSTQTIFHHKPLDEADRHTFSLIPIENATLPPIFNAFEIYSLKDISELEADKGDVDAITNIKSTYAVKKDWQGDPCVPMGYPWSGLNCSNEAAPRIISLNLSASRLKGEISSYISSLTMLQTLDLSNNNLTGQVPDFLSSLSDLKTLNLGNNKLSGPIPAELLKRSNDGSLSLSVGGNQNLDGCTSDPCPKNEKKKNNIIIPIVASIGGFLVVVTFAAVTFWIIKSRKKQEGKNVVSVVDKSETNSQFGNSLEVRRRQFTYSEVVKMTNNFSKVLGKGGFGKVYYGVIDEIQVAVKMLSLSSPQGYRQFQAEVTHLMRVHHRNLTSLVGYLNEGDHLGLIYEYMANGDLAKHLSERSVHILSWENRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTDNFQGKLADFGLSKSFPRDGNTHMSTVVAGTPGYLDPEYYVSNRLTEKSDVYSFGIALLEIISCKPVISRTGDTPHIAKWVTSLLARGDIQSIVDPRLEGQYETNSVWKTVEVAMACVAANSSRRPTMSDIVAELKDCLATELSRKLENRSLDSTNSTEMRSISVGFNASDSNPMAR 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 436207 443999 + ClG42_09g0003800.10 Clacu09g0038 256346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0038 1065 Pfam Protein tyrosine and serine/threonine kinase 758 1023 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0038 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 875 887 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0038 1065 Gene3D Ribonuclease Inhibitor 542 661 IPR032675 -
Clacu09g0038 1065 FunFam Leucine-rich repeat receptor-like protein kinase 728 830 - -
Clacu09g0038 1065 Gene3D Phosphorylase Kinase; domain 1 1 50 - -
Clacu09g0038 1065 Gene3D Phosphorylase Kinase; domain 1 743 830 - -
Clacu09g0038 1065 Pfam Leucine Rich repeats (2 copies) 606 642 IPR025875 -
Clacu09g0038 1065 ProSitePatterns Protein kinases ATP-binding region signature. 762 783 IPR017441 GO:0005524(InterPro)
Clacu09g0038 1065 SUPERFAMILY L domain-like 566 654 - -
Clacu09g0038 1065 Pfam Malectin-like domain 208 528 IPR024788 -
Clacu09g0038 1065 SUPERFAMILY Protein kinase-like (PK-like) 735 1023 IPR011009 -
Clacu09g0038 1065 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 831 1036 - -
Clacu09g0038 1065 FunFam Leucine-rich repeat receptor-like kinase 541 670 - -
Clacu09g0038 1065 PRINTS Leucine-rich repeat signature 628 641 - -
Clacu09g0038 1065 PRINTS Leucine-rich repeat signature 607 620 - -
Clacu09g0038 1065 SUPERFAMILY Protein kinase-like (PK-like) 4 183 IPR011009 -
Clacu09g0038 1065 PANTHER OS07G0107800 PROTEIN-RELATED 196 1032 - -
Clacu09g0038 1065 Gene3D Transferase(Phosphotransferase) domain 1 831 1048 - -
Clacu09g0038 1065 Gene3D Transferase(Phosphotransferase) domain 1 84 183 - -
Clacu09g0038 1065 ProSiteProfiles Protein kinase domain profile. 756 1027 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0038 1065 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515(InterPro)
Clacu09g0038 1065 SMART serkin_6 756 1027 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0032 Clacu-Chr9:391890 Clacu09g0038 Clacu-Chr9:436207 1.60E-239 dispersed
Clacu09g0033 Clacu-Chr9:398185 Clacu09g0038 Clacu-Chr9:436207 2.50E-245 dispersed
Clacu09g0038 Clacu-Chr9:436207 Clacu09g0040 Clacu-Chr9:464065 5.20E-261 dispersed
Clacu09g0037 Clacu-Chr9:428384 Clacu09g0038 Clacu-Chr9:436207 3.10E-299 tandem
Clacu09g0038 Clacu-Chr9:436207 Clacu09g0039 Clacu-Chr9:446381 9.70E-300 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73793 PF12819 Malectin_like 6.90E-108 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0038 - - - 0.0