Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0042 ATGCTTTTGGTCTGTCAAAATGACAGTTTTTACAGAAAGCTAAGCCTTTTTAGTGCGCATGGTATTGAAAATAACTTTGATTCTATTTCTCCATACCCATTTCAAGTTTCTTCATCATTTTCCAAATTAAGAAAGAGTTGCTTGAAACAAGATCAGTTTTTTTCTTTTTTCGTCATCGGTTTGGGATTTGAATTGATAATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATAATTCCAACTTCTTCAACTCACTTCAAGACTTCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTATCAGTCCTCCATTGACAAGCTTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACCGGCTTCAACGGCGACAAATCGGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTACACCAATTTATGGAACTTCGGAAGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTAAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA 1374 39.45 MLLVCQNDSFYRKLSLFSAHGIENNFDSISPYPFQVSSSFSKLRKSCLKQDQFFSFFVIGLGFELIMDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNNSNFFNSLQDFPIKEAATSSALVSKTGEALVISPPLTSFTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGRNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 482942 485571 - ClG42_09g0004200.10 Clacu09g0042 256350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0042 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 413 IPR036638 GO:0046983(InterPro)
Clacu09g0042 457 MobiDBLite consensus disorder prediction 434 457 - -
Clacu09g0042 457 Gene3D - 353 416 IPR036638 GO:0046983(InterPro)
Clacu09g0042 457 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 181 443 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0042 457 MobiDBLite consensus disorder prediction 265 309 - -
Clacu09g0042 457 MobiDBLite consensus disorder prediction 220 239 - -
Clacu09g0042 457 Coils Coil 387 414 - -
Clacu09g0042 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983(InterPro)
Clacu09g0042 457 Pfam Helix-loop-helix DNA-binding domain 357 398 IPR011598 GO:0046983(InterPro)
Clacu09g0042 457 FunFam BHLH transcription factor 351 415 - -
Clacu09g0042 457 MobiDBLite consensus disorder prediction 286 307 - -
Clacu09g0042 457 SMART finulus 354 403 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1306 Clacu-Chr2:26035364 Clacu09g0042 Clacu-Chr9:482942 1.80E-29 dispersed
Clacu03g0843 Clacu-Chr3:9901611 Clacu09g0042 Clacu-Chr9:482942 1.20E-08 dispersed
Clacu04g0742 Clacu-Chr4:21659075 Clacu09g0042 Clacu-Chr9:482942 1.20E-19 dispersed
Clacu05g2193 Clacu-Chr5:30540350 Clacu09g0042 Clacu-Chr9:482942 1.80E-30 dispersed
Clacu09g0042 Clacu-Chr9:482942 Clacu10g1039 Clacu-Chr10:22265571 1.20E-12 dispersed
Clacu02g0171 Clacu-Chr2:1644959 Clacu09g0042 Clacu-Chr9:482942 4.30E-09 transposed
Clacu07g1350 Clacu-Chr7:28328435 Clacu09g0042 Clacu-Chr9:482942 4.70E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48257 PF00010 HLH 8.90E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0042 - - - 0.0