Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0068 ATGAAAACTGCAGAAATTTCCTTTGAAATTAGGACTCTGATGGGGTTTCGATTACTGTTTCTGCTGTTCCAAATTTATTTTGCTGTTAGCTCTTTCTCTGTCTGTGAAGCTGCAGTTATTCTCCCAGGCAGGCCGAGTGGATTGCGTTCTGCACTCCCAGACCATGCTGTCACTCCAACATCTCATGGCTTTGGCAGGAAACACCATGGCAATTTGGATAATGCAGCCCCTAGTAAACCATTTAAAAGTTCATCTCCTCAGATCCATTCTCATTATAAAGCCATTCAATCAGATTATTCAAGTAGAGCTCCTAGCATTGCACTTCCGCCCACCGCGCCTGCTGAGAAATGGGGGCACGAACATACACTCTCACCATTGATCTCTTTTCATAAATTTCGTCATTCAAGAAGGAAGTTCAGGAACAATGCTCCACAGCCTACTTATCATGCATCGCCCCCGACTAGCAGCCAGAAAGGCCCTGCTGCTGTCTCTCCAATTCAGTCACCGTTACCATCTGTAGCGAGAGGGAGGTTGCCCGGACCTGCACCATCACCAACAATTCAACCCAACCACTATTATATGCCCATTCCTGCACCTACAACTTCTCCTATGGGTTCTTACAAGAAGAAGAAGAGTATGCCACCATCACAAGTTATGATTCTACCACCTCCACCTCCTAATGGGGATTGTACAATAGCATGTACAGAGCCATTGACATATACGCCTCCCGGGACGCAATGTGGCTGCGTGTGGCCAATTCAAGTCAAAATCATTCTTGATGTTGCAGTATACACGTTTTTTCCTCTGGTTTCAGAACTTGCAGAGGAAATTGCTGACAGTATCAGTCTGAACCAAAGCCAAGTTCGAATTATGGGAGCCGATGCTGCTAGTCAGCAGTTAGAAAAAACGACTGTCCTCATCAACTTGGTTCCGAGAGGATCAAAATTCAATCATAACACAGCCTTTTTTATATATCAGAAATTTTGGCGGAGAAAGATATTCATCAACCCTTCTTTGTTTGGAAGATATCAAGTACTAAATGTCAAATATCCAGGTCTTCCGCCATCTCCTCCATTGGCGCCTTCAGGTACGTCGTCTATTAATGATGGTTTGAACACTAGCAATACTAATGCTGGAAATGCAATTAAACCGTTGGGAGTTGACGTGCCAAGACGAAAAAAAGAAGGGCTTGGCAGAAACATGATTGCGGTGATTACTATATCATCGTTCACTGCCCTTGTCATGTGTGTTGGGCTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTCTACACATCAACCAGCACAAATTCCTCAAAACTTGATAGCCTCACCTACAAAACCACCAGGCACTGCTGGATTGATAATGGTTGGAAGTGAACCTGGTTCTTCATCCATGCCTCTCGATGCCGATCCTATGACGTATATTGGAGCTGCAAAGAACTTCACCTTGAAAGATATGGAGAAAGCCACTGACAACTTCGATACTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTATACAGTGGCAGTTTAGACGATGGAAGAGAAGTGGCTGTGAAGGTTCTTAAACGACATAATCAACATGGTATTCGGGAATTCTTGGCAGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAGTTGATTGGTATCTGCACAGAAGATCAGATTCGCTGCCTGGTATATGAATTGGTTCCTAGTGGAAGTGTCGAATCACACTTACATGGCATTGACAAGTTAACCAGTCCACTTGACTGGGATGCCCGCATGAAGATTGCCCTTGGTGCTGCTCGAGGCCTAGCCTATCTGCATGAAGACTCCAATCCTCGAGTCATTCATCGAGACTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACACCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACACATGTCATGGGAACTTTTGGTTATCTAGCTCCAGAATATGCAATGACTGGCCACCTTCTTGTAAAGAGCGATGTCTATAGCTATGGTGTTGTCCTTCTAGAGCTGCTTACAGGAAGAAAGCCAGTAGACTTGTCACTTCCACCCGGACAAGAAAATCTTGTTGCTTGGGCTCGTCCGCTTCTCACGAGCAAGGAAGGATTAGATGCAATAACAGACCCAGCTATCAAGTCTGACATCTCCATTGATAGCTTGGCCAGAGTAGCAGCGATTGCTTCAATGTGTGTACAGCCAGAAGTATCTCACAGACCATTTATGGGTGAGGTTGTTCAAGCCCTGAAACTTGTTTGCAATGAATTTGAAGAAACTAACGATCCAGTTTCACGAAGTTACAGCCGAGACGAACTTCTAAGTTACATGGATAGTAAATTTGGAGGAATTTCCGGTGAAATACTAAACGCTCCTGAGACCTCGCACACCTTTCCTTCAGGAAAAGAGAAGAATGTAGGATTATCGGCGTCGGATTTGATCAGTGCATCTGCAAGATTTGAAGGACAGGAACTGGTTTCTTCTAGATGGCATTCATCAAACTCGGAACCATTAAGAACTGGAAGAAAAAAGCACTTATGGCAGAAGCTAAGAAGTTTCTCACGAGGCAGCTTCAGTGAACATGGCTTTTCTGCAAAGTTTTGGCCTGGATTTCGTTAG 2670 44.19 MKTAEISFEIRTLMGFRLLFLLFQIYFAVSSFSVCEAAVILPGRPSGLRSALPDHAVTPTSHGFGRKHHGNLDNAAPSKPFKSSSPQIHSHYKAIQSDYSSRAPSIALPPTAPAEKWGHEHTLSPLISFHKFRHSRRKFRNNAPQPTYHASPPTSSQKGPAAVSPIQSPLPSVARGRLPGPAPSPTIQPNHYYMPIPAPTTSPMGSYKKKKSMPPSQVMILPPPPPNGDCTIACTEPLTYTPPGTQCGCVWPIQVKIILDVAVYTFFPLVSELAEEIADSISLNQSQVRIMGADAASQQLEKTTVLINLVPRGSKFNHNTAFFIYQKFWRRKIFINPSLFGRYQVLNVKYPGLPPSPPLAPSGTSSINDGLNTSNTNAGNAIKPLGVDVPRRKKEGLGRNMIAVITISSFTALVMCVGLAWLCLLRCRVSTHQPAQIPQNLIASPTKPPGTAGLIMVGSEPGSSSMPLDADPMTYIGAAKNFTLKDMEKATDNFDTARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPSGSVESHLHGIDKLTSPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDAITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNDPVSRSYSRDELLSYMDSKFGGISGEILNAPETSHTFPSGKEKNVGLSASDLISASARFEGQELVSSRWHSSNSEPLRTGRKKHLWQKLRSFSRGSFSEHGFSAKFWPGFR 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 676813 681121 - ClG42_09g0006800.10 Clacu09g0068 256376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0068 889 MobiDBLite consensus disorder prediction 141 163 - -
Clacu09g0068 889 Gene3D Transferase(Phosphotransferase) domain 1 570 789 - -
Clacu09g0068 889 CDD STKc_IRAK 500 768 - -
Clacu09g0068 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0068 889 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Clacu09g0068 889 MobiDBLite consensus disorder prediction 59 86 - -
Clacu09g0068 889 Pfam Protein tyrosine and serine/threonine kinase 497 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0068 889 FunFam receptor-like serine/threonine-protein kinase ALE2 468 569 - -
Clacu09g0068 889 PANTHER OS01G0750732 PROTEIN 230 788 IPR050885 -
Clacu09g0068 889 Gene3D Phosphorylase Kinase; domain 1 465 569 - -
Clacu09g0068 889 FunFam Receptor-like serine/threonine-protein kinase ALE2 570 787 - -
Clacu09g0068 889 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524(InterPro)
Clacu09g0068 889 MobiDBLite consensus disorder prediction 176 192 - -
Clacu09g0068 889 MobiDBLite consensus disorder prediction 141 192 - -
Clacu09g0068 889 ProSiteProfiles Protein kinase domain profile. 494 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0143 Clacu-Chr7:1810688 Clacu09g0068 Clacu-Chr9:676813 4.10E-170 dispersed
Clacu09g0068 Clacu-Chr9:676813 Clacu10g1148 Clacu-Chr10:24024521 6.30E-103 dispersed
Clacu03g1595 Clacu-Chr3:29591849 Clacu09g0068 Clacu-Chr9:676813 2.80E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73797 PF07714 PK_Tyr_Ser-Thr 1.00E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0068 - - - 0.0