Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g0071 | ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCACAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCTGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATCGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCGTCATCCTGATCTGGTTCATCAGAGTGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAGCAGGCTCAAGATCAAGAACTTAAAGGTTCGGGGGTTAAGGCACCTGCTCCTGCTTCTTTCCTTGAAGTAGGAGATCCAAACCTTCAAATTCCACTTTTCTTATACTCTTTGCTCAGAAAGTGA | 918 | 46.3 | MSPINHHQHFSKSTSAAVTTTTSSTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDRHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKGSGVKAPAPASFLEVGDPNLQIPLFLYSLLRK | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 697441 | 699922 | - | ClG42_09g0007100.10 | Clacu09g0071 | 256379 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g0071 | 305 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Clacu09g0071 | 305 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 29 | 228 | - | - | |
Clacu09g0071 | 305 | ProSiteProfiles | LOB domain profile. | 30 | 131 | IPR004883 | - | |
Clacu09g0071 | 305 | Pfam | Lateral organ boundaries (LOB) domain | 31 | 126 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1046 | Clacu-Chr2:16620067 | Clacu09g0071 | Clacu-Chr9:697441 | 2.50E-19 | dispersed | |
Clacu08g1860 | Clacu-Chr8:27903692 | Clacu09g0071 | Clacu-Chr9:697441 | 1.30E-26 | dispersed | |
Clacu09g0071 | Clacu-Chr9:697441 | Clacu09g1888 | Clacu-Chr9:33753240 | 4.80E-26 | dispersed | |
Clacu09g0071 | Clacu-Chr9:697441 | Clacu10g1381 | Clacu-Chr10:26924184 | 1.10E-22 | transposed | |
Clacu09g0071 | Clacu-Chr9:697441 | Clacu06g1830 | Clacu-Chr6:28860152 | 1.10E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48258 | PF03195 | LOB | 1.00E-35 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g0071 | - | - | - | 0.0 |