Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0071 ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCACAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCTGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATCGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCGTCATCCTGATCTGGTTCATCAGAGTGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAGCAGGCTCAAGATCAAGAACTTAAAGGTTCGGGGGTTAAGGCACCTGCTCCTGCTTCTTTCCTTGAAGTAGGAGATCCAAACCTTCAAATTCCACTTTTCTTATACTCTTTGCTCAGAAAGTGA 918 46.3 MSPINHHQHFSKSTSAAVTTTTSSTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDRHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKGSGVKAPAPASFLEVGDPNLQIPLFLYSLLRK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 697441 699922 - ClG42_09g0007100.10 Clacu09g0071 256379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0071 305 MobiDBLite consensus disorder prediction 1 21 - -
Clacu09g0071 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 228 - -
Clacu09g0071 305 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Clacu09g0071 305 Pfam Lateral organ boundaries (LOB) domain 31 126 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1046 Clacu-Chr2:16620067 Clacu09g0071 Clacu-Chr9:697441 2.50E-19 dispersed
Clacu08g1860 Clacu-Chr8:27903692 Clacu09g0071 Clacu-Chr9:697441 1.30E-26 dispersed
Clacu09g0071 Clacu-Chr9:697441 Clacu09g1888 Clacu-Chr9:33753240 4.80E-26 dispersed
Clacu09g0071 Clacu-Chr9:697441 Clacu10g1381 Clacu-Chr10:26924184 1.10E-22 transposed
Clacu09g0071 Clacu-Chr9:697441 Clacu06g1830 Clacu-Chr6:28860152 1.10E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48258 PF03195 LOB 1.00E-35 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0071 - - - 0.0