Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0073 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGTTGATGGCGACAAATAGATTCGTATGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTCAACAATAACAATAATAATTTTGCTCTCAAACGAGATTTCAACAATAATAACAGCAGCAGCAACAACAACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAGCCATCGGATCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGAGGAGGAGGGGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCGCACCCGCCATCAACACCACCACCGCTGCCACTTCCGGCGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGTCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCATTCTCAAATCCAGAAGCCATGGCAGGGTTAG 1581 44.47 MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSSSNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGGGGAVSCSSSSCTDYGNKAASASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPAPAINTTTAATSGGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLHSQIQKPWQG 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 709407 712252 - ClG42_09g0007300.10 Clacu09g0073 256381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0073 526 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
Clacu09g0073 526 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Clacu09g0073 526 MobiDBLite consensus disorder prediction 46 72 - -
Clacu09g0073 526 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Clacu09g0073 526 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Clacu09g0073 526 SMART c2h2final6 166 186 IPR013087 -
Clacu09g0073 526 SMART c2h2final6 131 161 IPR013087 -
Clacu09g0073 526 SMART c2h2final6 89 111 IPR013087 -
Clacu09g0073 526 MobiDBLite consensus disorder prediction 50 64 - -
Clacu09g0073 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 493 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu09g0073 526 Gene3D Classic Zinc Finger 68 139 - -
Clacu09g0073 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Clacu09g0073 526 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Clacu09g0073 526 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Clacu09g0073 526 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Clacu09g0073 526 FunFam protein indeterminate-domain 12-like 68 137 - -
Clacu09g0073 526 Gene3D Classic Zinc Finger 144 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2001 Clacu-Chr1:31947302 Clacu09g0073 Clacu-Chr9:709407 9.60E-88 dispersed
Clacu04g0935 Clacu-Chr4:23612608 Clacu09g0073 Clacu-Chr9:709407 3.00E-87 dispersed
Clacu09g0073 Clacu-Chr9:709407 Clacu10g2010 Clacu-Chr10:33578026 3.80E-87 dispersed
Clacu05g1952 Clacu-Chr5:28679428 Clacu09g0073 Clacu-Chr9:709407 2.70E-88 wgd
Clacu07g1377 Clacu-Chr7:28597944 Clacu09g0073 Clacu-Chr9:709407 1.10E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48259 PF00096 zf-C2H2 0.0053 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0073 K25870 - csv:101220200 717.227