Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0083 ATGATGGAACAATTCTGGGAACCTCGATCTACGACGGTTCTGGATTCTCAATATCCTTTGATTGTTTTTAGCCACCGTGACCTACGCAGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAACTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGACTACCCCTGTTCTTAGCCCTTCCGTATCCATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTACCAACCCAACCAGAAAATTACCTTCATCGAATTGGCCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 1545 43.95 MMEQFWEPRSTTVLDSQYPLIVFSHRDLRSPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQTTPVLSPSVSMAGLAPEGSQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 765115 770297 - ClG42_09g0008300.10 Clacu09g0083 256391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0083 514 Pfam DEAD/DEAH box helicase 166 328 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Clacu09g0083 514 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Clacu09g0083 514 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 342 IPR014001 -
Clacu09g0083 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 495 IPR027417 -
Clacu09g0083 514 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 136 500 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Clacu09g0083 514 SMART helicmild6 394 475 IPR001650 -
Clacu09g0083 514 Pfam Helicase conserved C-terminal domain 367 475 IPR001650 -
Clacu09g0083 514 CDD DEADc_EIF4A 146 343 - -
Clacu09g0083 514 SMART ultradead3 160 357 IPR014001 -
Clacu09g0083 514 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 514 IPR001650 -
Clacu09g0083 514 CDD SF2_C_DEAD 354 484 - -
Clacu09g0083 514 FunFam Eukaryotic initiation factor 4A-II 129 348 - -
Clacu09g0083 514 FunFam Eukaryotic initiation factor 4A-III 349 514 - -
Clacu09g0083 514 Gene3D - 131 349 IPR027417 -
Clacu09g0083 514 Gene3D - 350 514 IPR027417 -
Clacu09g0083 514 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1486 Clacu-Chr8:24838638 Clacu09g0083 Clacu-Chr9:765115 2.30E-62 dispersed
Clacu09g0083 Clacu-Chr9:765115 Clacu09g0310 Clacu-Chr9:2685579 1.80E-49 dispersed
Clacu01g0071 Clacu-Chr1:620108 Clacu09g0083 Clacu-Chr9:765115 4.50E-49 transposed
Clacu01g0537 Clacu-Chr1:5331613 Clacu09g0083 Clacu-Chr9:765115 3.90E-39 transposed
Clacu01g0821 Clacu-Chr1:9008785 Clacu09g0083 Clacu-Chr9:765115 3.60E-38 transposed
Clacu02g1914 Clacu-Chr2:32701844 Clacu09g0083 Clacu-Chr9:765115 8.90E-54 transposed
Clacu03g1830 Clacu-Chr3:32093403 Clacu09g0083 Clacu-Chr9:765115 1.80E-54 transposed
Clacu10g1188 Clacu-Chr10:24625045 Clacu09g0083 Clacu-Chr9:765115 1.20E-141 transposed
Clacu10g1938 Clacu-Chr10:32978838 Clacu09g0083 Clacu-Chr9:765115 1.10E-54 transposed
Clacu11g1850 Clacu-Chr11:29620637 Clacu09g0083 Clacu-Chr9:765115 5.10E-51 transposed
Clacu09g1019 Clacu-Chr9:9709909 Clacu09g0083 Clacu-Chr9:765115 1.60E-31 transposed
Clacu07g1389 Clacu-Chr7:28715675 Clacu09g0083 Clacu-Chr9:765115 8.50E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0083 K03257 - csv:101221456 816.224