Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0085 ATGGCAACTCCCATGGCTGAAGAAGCAACCATCGATTCCAATTCCACTGCCCACACGGTGATCGCCATTAGTAGGGACAAGAACAGTCAATATGCGGTTAAATGGGCTGTGGAACACCTGTTCAATAGGAAGAACACTGGCGATTGCATCCTTATCCATGTTCGCAACCAGAGTTTGCATCCCCAGGAGGCGGATGCGGTTCCTAAGGAGTATCGTCCACCATCTGAAGCAGAGTTGCATCAGTTCTTCCTTCCCTATCGAGGATTCTGCGCACGAAAAGGAATAGTTACAAAGGAGACAATCATCCATGACATTGATGTTCCAAGTGCACTTATTGACTATGTCAGTAAACATTCCATTAGCAATATTGTTGTGGGTGCTTCCAGCCGGAATGCTATTTTGAGGAAGTTCAAGAATCCTGATGTCCCAACGTGCTTACTCAAATCAACTCCAGAATCATGCTCTGTATATGTCATAGCTAGAGGAAAAGTTCATACTAAGAGATTGAGAAAGCGACATAAGTCACAGACTGATGTGAGAGAAACTCAAACCAGAACTCCAGAAATCGACAGGTCTCTATCAAAAATACAAAAATCAGCATATTCTAATATCTCAGAACTATCTGAAGATAGAAACAGGGATAGTTCTGGCACCAGTAATGATTCAATGTCAGGCATTAGTGACTTTTCGGGGCCTCTCAGTTTCAAATCAATTGAAACATCCTTTGAGAGCCCAGATTTTTCCTTAACCTCCTCAGAGACTAGTACGAGGAGCTTTGTCTCCTCTAACACCCCACCTTCCATTGAATCTGAGATGAGAAAGTTGAGGTTTGAACTCAAACAGACGATGGAAATGTATGACTCAGCTTCCAAGGAAGCTGTAGTAGCAAAACAAAAGGCAAATGAACTCCAACAGTTGAAGATGGATATGGAAGAAGACAGAAAAATTGAGCGTGGTAAATCTGCAGAAGAGGTTCTTAGAGCATTGGCAGAGTTTGAGAAGCAGAAGAACAAGGCTGCGACAGAAGCAGCTCTAATGGCGCAGAAGTTAGCCGAATTAGAGAACCAGAAAAAACGAATTGTTACTGAAGAAAAAGCTAGGATTGAGGCAGAGGAGAGGAAGAAAACAATGGAGTTATTTGAACGCAGTAATATCTGTTATAGACGATACAGCATTGACGAGATTGAAGCTGCAACAGATCATTTTAATGAGTCAAACAAGATTGGTGAAGGTGGCTATGGACCTGTTTACCAAGCCTTACTTGATCATACTCCTGTTGCCATTAAGATATTGCGACCAGATAGATCTCATGGGCAGAGACAATTCCAGCAAGAGATTGAGGTTCTAAGCCGCATGAGGCATCCGCACATGGTTCTCCTCTTAGGTGCCTGCCCAGAATACGGTTGCCTTGTTTATGAATATATGGAAAACGGGAGTTTGGAAGACCGCCTCTTCCAAAAAGATAACACTCCTCCAATGCCTTGGAGAACACGTTTCAGGATAGCTTCTGACATTGCCACTGCCCTACTCTTCCTTCATCAAATGAAGCCAGAACCTGTGGTGCATCGTGATCTCAAGCCAGCCAACATTCTCTTAGATCACAACTACGTGAGCAAAATAGGTGATGTGGGTTTGGCCAGGCTAGTTCCACCATCGGTTGCTGATAGTGTCACTCAATATCACATGACTGCTGCAGCTGGAACCTTCTGTTACATTGATCCAGAATATCAACAAACAGGAATGTTGGGGGTGAAATCAGATATTTACTCATTTGGTGTTCTGCTACTTCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAACATGGCAAATTCCCGCAGATACTTGATCCTGCCATTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTGAAGTGCTGTGAGCTAAGGAAAAGAGATAGGCCCGACCTCCGTACAGTTCTATTGCCAGAACTGGTCAGGTTAAAAAATCTGGGGTCAGGCGAAATGCCACCAAAGGGTAAGCTCCCAAATGTCGGCAAAGCGCGTGATCAACGGGCTTCCAACTCAGTTCCAATTTTGAATGGATCAGAGAGTGAGATCTATGTGAGAAAAAGATGGCAGCGATTGAAAGTGAGTACGAGATTTTGGAGCCAAAAGGGTATTGGTTTGAATACCGTTTCTCCGCAGATAAAGAAAAAATGGAGCTGGAACAACAGTGATGCAAAAGTCTTAAATATACCATTACCAATGAGTGGAAAACAAGTTGATGTACTCTCAAAGAAGCAGCAAAGCTCTGAACGCTGTTGGTCTTTGGTAGGTTGTGCTTCTGCTGCTACTATGGGGTTGAAGAAACTACACTCATTTTCATAA 2391 43.62 MATPMAEEATIDSNSTAHTVIAISRDKNSQYAVKWAVEHLFNRKNTGDCILIHVRNQSLHPQEADAVPKEYRPPSEAELHQFFLPYRGFCARKGIVTKETIIHDIDVPSALIDYVSKHSISNIVVGASSRNAILRKFKNPDVPTCLLKSTPESCSVYVIARGKVHTKRLRKRHKSQTDVRETQTRTPEIDRSLSKIQKSAYSNISELSEDRNRDSSGTSNDSMSGISDFSGPLSFKSIETSFESPDFSLTSSETSTRSFVSSNTPPSIESEMRKLRFELKQTMEMYDSASKEAVVAKQKANELQQLKMDMEEDRKIERGKSAEEVLRALAEFEKQKNKAATEAALMAQKLAELENQKKRIVTEEKARIEAEERKKTMELFERSNICYRRYSIDEIEAATDHFNESNKIGEGGYGPVYQALLDHTPVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPPMPWRTRFRIASDIATALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGKFPQILDPAITDWPIEDTLGLAQLALKCCELRKRDRPDLRTVLLPELVRLKNLGSGEMPPKGKLPNVGKARDQRASNSVPILNGSESEIYVRKRWQRLKVSTRFWSQKGIGLNTVSPQIKKKWSWNNSDAKVLNIPLPMSGKQVDVLSKKQQSSERCWSLVGCASAATMGLKKLHSFS 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 773867 778088 - ClG42_09g0008500.10 Clacu09g0085 256393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0085 796 MobiDBLite consensus disorder prediction 168 226 - -
Clacu09g0085 796 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 374 474 - -
Clacu09g0085 796 SUPERFAMILY Protein kinase-like (PK-like) 379 661 IPR011009 -
Clacu09g0085 796 Gene3D Phosphorylase Kinase; domain 1 369 474 - -
Clacu09g0085 796 Coils Coil 322 373 - -
Clacu09g0085 796 Pfam Universal stress protein family 20 135 IPR006016 -
Clacu09g0085 796 Pfam Protein kinase domain 403 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0085 796 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 159 - -
Clacu09g0085 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0085 796 CDD STK_N 19 162 - -
Clacu09g0085 796 Gene3D HUPs 5 160 IPR014729 -
Clacu09g0085 796 MobiDBLite consensus disorder prediction 246 267 - -
Clacu09g0085 796 PANTHER OS02G0152300 PROTEIN 21 676 IPR051348 -
Clacu09g0085 796 SMART serkin_6 402 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0085 796 Coils Coil 272 316 - -
Clacu09g0085 796 MobiDBLite consensus disorder prediction 175 192 - -
Clacu09g0085 796 Gene3D Transferase(Phosphotransferase) domain 1 475 671 - -
Clacu09g0085 796 ProSiteProfiles Protein kinase domain profile. 402 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1155 Clacu-Chr8:21603546 Clacu09g0085 Clacu-Chr9:773867 2.00E-182 dispersed
Clacu09g0085 Clacu-Chr9:773867 Clacu11g1321 Clacu-Chr11:22504247 5.40E-154 dispersed
Clacu11g0311 Clacu-Chr11:2797434 Clacu09g0085 Clacu-Chr9:773867 2.50E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73798 PF00069 Pkinase 5.00E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0085 - - - 0.0